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Table 4 The top 30 genes with differential expression reported using edgeR method

From: OMICfpp: a fuzzy approach for paired RNA-Seq counts

ENSEMBL ID Gene symbol Synonyms CRC status Other cancer
ENSG00000167767 KRT80 KB20 Known [96] Known [97]
ENSG00000251026 LINC02163 - New Known [109]
ENSG00000261650 AC055717.2 - New New
ENSG00000142959 BEST4 VMD2L2 New New
ENSG00000182938 OTOP3 - New New
ENSG00000164283 ESM1 endocan Known [94] Known [110]
ENSG00000168748 CA7 CAVII, CA-VII Known [111] New
ENSG00000183034 OTOP2 - New New
ENSG00000105989 WNT2 IRP, INT1L1 Known [112] Known [113]
ENSG00000175832 ETV4 E1AF, PEA3, E1A-F, PEAS3 Known [114] Known [115]
ENSG00000224269 AP000697.1 - New New
ENSG00000120254 MTHFD1L DKFZP586G1517, FLJ21145, FTHFSDC1, MTC1THFS, dJ292B18.2 Known [116] Known [117]
ENSG00000230316 FEZF1-AS1 - Known [118] Known [119]
ENSG00000129474 AJUBA JUB, MGC15563 Known [120] Known [121]
ENSG00000103888 CEMIP CCSP1, HYBID, TMEM2L, KIAA1199, IR2155535 Known [122] Known [122]
ENSG00000163347 CLDN1 CLD1, SEMP1, ILVASC Known [123] Known [124]
ENSG00000062038 CDH3 CDHP, HJMD, PCAD Known [28] Known [125]
ENSG00000214039 LINC02418 - New New
ENSG00000174015 SPERT CBY2, NURIT Known [126] New
ENSG00000060718 COL11A1 CO11A1, COLL6, STL2 Known [63] Known [64]
ENSG00000163815 CLEC3B TN, TNA Known [127] Known [128]
ENSG00000164379 FOXQ1 HFH1 Known [129] Known [130]
ENSG00000122641 INHBA EDF, FRP Known [131] Known [132]
ENSG00000172031 EPHX4 ABHD7, EPHXRP, FLJ90341, EH4 Known [133] New
ENSG00000167755 KLK6 Bssp, Klk7, PRSS18, PRSS9, neurosin, SP59 Known [134] Known [135]
ENSG00000226320 LINC01811 - New New
ENSG00000101255 TRIB3 NIPK, SINK, TRB3, SKIP3, C20orf97, dJ1103G7.3 Known [136] Known [137]
ENSG00000197905 TEAD4 TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B Known [138] Known [139]
ENSG00000231172 AC007099.1 LOC101927884 New New
ENSG00000170373 CST1 - Known [140] Known [141]
  1. The term “known” is assigned if the gene has been previously reported as differentially expressed in colorectal cancer (CRC) or in other types of cancer, otherwise “New” is used.The genes reported in common by OMICfpp with an orness value of 0.37 and 0.93, edgeR and DESeq2 are in bold entries