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Table 4 The top 30 genes with differential expression reported using edgeR method

From: OMICfpp: a fuzzy approach for paired RNA-Seq counts

ENSEMBL ID

Gene symbol

Synonyms

CRC status

Other cancer

ENSG00000167767

KRT80

KB20

Known [96]

Known [97]

ENSG00000251026

LINC02163

-

New

Known [109]

ENSG00000261650

AC055717.2

-

New

New

ENSG00000142959

BEST4

VMD2L2

New

New

ENSG00000182938

OTOP3

-

New

New

ENSG00000164283

ESM1

endocan

Known [94]

Known [110]

ENSG00000168748

CA7

CAVII, CA-VII

Known [111]

New

ENSG00000183034

OTOP2

-

New

New

ENSG00000105989

WNT2

IRP, INT1L1

Known [112]

Known [113]

ENSG00000175832

ETV4

E1AF, PEA3, E1A-F, PEAS3

Known [114]

Known [115]

ENSG00000224269

AP000697.1

-

New

New

ENSG00000120254

MTHFD1L

DKFZP586G1517, FLJ21145, FTHFSDC1, MTC1THFS, dJ292B18.2

Known [116]

Known [117]

ENSG00000230316

FEZF1-AS1

-

Known [118]

Known [119]

ENSG00000129474

AJUBA

JUB, MGC15563

Known [120]

Known [121]

ENSG00000103888

CEMIP

CCSP1, HYBID, TMEM2L, KIAA1199, IR2155535

Known [122]

Known [122]

ENSG00000163347

CLDN1

CLD1, SEMP1, ILVASC

Known [123]

Known [124]

ENSG00000062038

CDH3

CDHP, HJMD, PCAD

Known [28]

Known [125]

ENSG00000214039

LINC02418

-

New

New

ENSG00000174015

SPERT

CBY2, NURIT

Known [126]

New

ENSG00000060718

COL11A1

CO11A1, COLL6, STL2

Known [63]

Known [64]

ENSG00000163815

CLEC3B

TN, TNA

Known [127]

Known [128]

ENSG00000164379

FOXQ1

HFH1

Known [129]

Known [130]

ENSG00000122641

INHBA

EDF, FRP

Known [131]

Known [132]

ENSG00000172031

EPHX4

ABHD7, EPHXRP, FLJ90341, EH4

Known [133]

New

ENSG00000167755

KLK6

Bssp, Klk7, PRSS18, PRSS9, neurosin, SP59

Known [134]

Known [135]

ENSG00000226320

LINC01811

-

New

New

ENSG00000101255

TRIB3

NIPK, SINK, TRB3, SKIP3, C20orf97, dJ1103G7.3

Known [136]

Known [137]

ENSG00000197905

TEAD4

TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B

Known [138]

Known [139]

ENSG00000231172

AC007099.1

LOC101927884

New

New

ENSG00000170373

CST1

-

Known [140]

Known [141]

  1. The term “known” is assigned if the gene has been previously reported as differentially expressed in colorectal cancer (CRC) or in other types of cancer, otherwise “New” is used.The genes reported in common by OMICfpp with an orness value of 0.37 and 0.93, edgeR and DESeq2 are in bold entries