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Fig. 3 | BMC Genomics

Fig. 3

From: PLAIDOH: a novel method for functional prediction of long non-coding RNAs identifies cancer-specific LncRNA activities

Fig. 3

PLAIDOH reveals global patterns of LCP co-expression. LncRNA expression (log10 FPKM) (a & c) or LCP correlation (−log10 Spearman adjusted p-value) (b & d), are plotted relative to genomic distance from each lncRNA to a coding gene (a & b) or the nearest enhancer (c & d) within 400 kb regions flanking the lncRNA. LCPs with positive Spearman correlation coefficients (rho) are plotted in the upper half of each plot; those with negative Spearman correlation coefficients (rho) are plotted in the lower half. Black points highlight LCPs with adjusted Spearman p-values < 0.05 or FPKM > 1

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BMC Genomics

ISSN: 1471-2164

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