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Table 1 Example PLAIDOH input table. Example header and first two lines of the modified bedfile required from the user as an input file

From: PLAIDOH: a novel method for functional prediction of long non-coding RNAs identifies cancer-specific LncRNA activities

#CHR

START

STOP

NAME

TYPE

SAMPLE1

SAMPLEN

chr1

112

256

DHX9

protein_coding

0.675

5.89

chr1

778

4334

AC00896.1

lncRNA

89

4

chr1

334

566

RP9911.3

antisense_rna

8.3

0.33