Table 1 Statistics of all the samples mapped to the reference genome
From: Transcriptome sequencing analysis of maize embryonic callus during early redifferentiation
Line | Stage | Biological replicates | All reads | Mapped Reads | Unmapped Reads | Unique Mapped Rades | Mapping Rates | Unique Mapping Rates |
|---|---|---|---|---|---|---|---|---|
141 | Control | 1 | 13,822,187 | 8,714,174 | 5,108,013 | 8,485,703 | 0.6304 | 0.6139 |
2 | 13,434,657 | 8,598,351 | 4,836,306 | 8,360,218 | 0.6400 | 0.6223 | ||
3 | 13,985,300 | 8,979,156 | 5,006,144 | 8,740,197 | 0.6420 | 0.6250 | ||
Stage I | 1 | 14,055,149 | 9,202,394 | 4,852,755 | 8,943,796 | 0.6547 | 0.6363 | |
2 | 14,044,846 | 9,286,325 | 4,758,521 | 9,028,947 | 0.6612 | 0.6429 | ||
3 | 13,449,932 | 8,819,316 | 4,630,616 | 8,575,390 | 0.6557 | 0.6376 | ||
Stage II | 1 | 13,366,341 | 8,603,256 | 4,763,085 | 8,378,170 | 0.6437 | 0.6268 | |
2 | 14,067,230 | 9,026,700 | 5,040,530 | 8,778,827 | 0.6417 | 0.6241 | ||
3 | 13,404,850 | 8,783,565 | 4,621,285 | 8,552,222 | 0.6553 | 0.6380 | ||
Stage III | 1 | 14,011,138 | 9,139,636 | 4,871,502 | 8,885,358 | 0.6523 | 0.6342 | |
2 | 13,992,015 | 9,025,007 | 4,967,008 | 8,771,520 | 0.6450 | 0.6269 | ||
3 | 13,404,219 | 8,755,804 | 4,648,415 | 8,510,385 | 0.6532 | 0.6349 | ||
ZYDH381–1 | Control | 1 | 13,535,081 | 9,264,675 | 4,270,406 | 8,992,364 | 0.6845 | 0.6644 |
2 | 13,446,968 | 9,102,739 | 4,344,229 | 8,836,735 | 0.6769 | 0.6572 | ||
3 | 13,477,135 | 9,024,884 | 4,452,251 | 8,770,579 | 0.6696 | 0.6508 | ||
Stage I | 1 | 14,017,567 | 9,617,028 | 4,400,539 | 9,372,156 | 0.6861 | 0.6686 | |
2 | 13,638,752 | 9,364,693 | 4,274,059 | 9,126,774 | 0.6866 | 0.6692 | ||
3 | 13,507,384 | 9,348,406 | 4,158,978 | 9,101,693 | 0.6921 | 0.6738 | ||
Stage II | 1 | 13,412,867 | 9,156,535 | 4,256,332 | 8,916,334 | 0.6827 | 0.6648 | |
2 | 13,447,590 | 9,225,042 | 4,222,548 | 8,993,871 | 0.6860 | 0.6688 | ||
3 | 13,452,005 | 9,246,867 | 4,205,138 | 9,004,531 | 0.6874 | 0.6694 | ||
Stage III | 1 | 13,348,510 | 9,087,187 | 4,261,323 | 8,850,995 | 0.6808 | 0.6631 | |
2 | 13,454,704 | 9,138,751 | 4,315,953 | 8,897,604 | 0.6792 | 0.6613 | ||
3 | 13,364,828 | 9,002,084 | 4,362,744 | 8,775,990 | 0.6736 | 0.6566 | ||
DH3732 | Control | 1 | 13,542,727 | 8,787,059 | 4,755,668 | 8,532,583 | 0.6488 | 0.6300 |
2 | 13,440,273 | 8,418,935 | 5,021,338 | 8,162,067 | 0.6264 | 0.6073 | ||
3 | 13,467,285 | 8,502,174 | 4,965,111 | 8,235,774 | 0.6313 | 0.6115 | ||
Stage I | 1 | 13,950,754 | 8,748,280 | 5,202,474 | 8,507,545 | 0.6271 | 0.6098 | |
2 | 13,913,447 | 8,765,080 | 5,148,367 | 8,512,786 | 0.6300 | 0.6118 | ||
3 | 13,900,865 | 8,794,870 | 5,105,995 | 8,543,188 | 0.6327 | 0.6146 | ||
Stage II | 1 | 13,380,869 | 8,553,535 | 4,827,334 | 8,319,669 | 0.6392 | 0.6218 | |
2 | 13,915,518 | 8,791,565 | 5,123,953 | 8,541,320 | 0.6318 | 0.6138 | ||
3 | 13,416,949 | 8,499,351 | 4,917,598 | 8,265,621 | 0.6335 | 0.6161 | ||
Stage III | 1 | 13,389,978 | 8,582,279 | 4,807,699 | 8,333,240 | 0.6409 | 0.6223 | |
2 | 13,876,459 | 8,882,088 | 4,994,371 | 8,616,149 | 0.6401 | 0.6209 | ||
3 | 13,867,073 | 8,887,087 | 4,979,986 | 8,630,474 | 0.6409 | 0.6224 | ||
DH40 | Control | 1 | 13,449,919 | 8,689,301 | 4,760,618 | 8,487,275 | 0.6460 | 0.6310 |
2 | 13,540,509 | 8,643,739 | 4,896,770 | 8,422,063 | 0.6384 | 0.6220 | ||
3 | 13,482,696 | 8,542,803 | 4,939,893 | 8,337,800 | 0.6336 | 0.6184 | ||
Stage I | 1 | 13,749,465 | 8,820,722 | 4,928,743 | 8,596,240 | 0.6415 | 0.6252 | |
2 | 13,703,965 | 8,704,100 | 4,999,865 | 8,483,808 | 0.6352 | 0.6191 | ||
3 | 13,776,438 | 8,854,412 | 4,922,026 | 8,623,368 | 0.6427 | 0.6260 | ||
Stage II | 1 | 13,978,916 | 9,059,933 | 4,918,983 | 8,822,962 | 0.6481 | 0.6312 | |
2 | 13,342,096 | 8,623,085 | 4,719,011 | 8,403,633 | 0.6463 | 0.6299 | ||
3 | 13,401,358 | 8,706,297 | 4,695,061 | 8,477,048 | 0.6497 | 0.6326 | ||
Stage III | 1 | 13,629,650 | 8,803,902 | 4,825,748 | 8,570,618 | 0.6459 | 0.6288 | |
2 | 13,824,878 | 8,802,559 | 5,022,319 | 8,575,593 | 0.6367 | 0.6203 | ||
3 | 13,637,727 | 8,892,013 | 4,745,714 | 8,651,254 | 0.6520 | 0.6344 |