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Table 2 The most differentially expressed specific common DEGs of the two high-regeneration lines

From: Transcriptome sequencing analysis of maize embryonic callus during early redifferentiation

GeneID

Gene description

Expression_ ratios

141

DH40

DH3732

ZYDH381–1

I/CK

II/CK

III/CK

I/CK

II/CK

III/CK

I/CK

II/CK

III/CK

I/CK

II/CK

III/CK

Zm00001d019518

Photosystem I reaction center subunit IV A

3.25

4.27

4.74

5.18

6.58

6.44

0.64

3.56

4.26

1.79

3.18

3.36

Zm00001d042178

Photosystem II reaction center psb28 protein

3.15

3.73

3.98

4.95

5.76

5.70

−2.39

0.00

0.33

0.72

1.80

2.15

Zm00001d039687

Photosystem I reaction center subunit XI chloroplastic

3.01

3.88

4.12

3.99

5.21

4.90

0.20

0.30

−0.02

0.00

0.34

1.09

Zm00001d009929

Beta-propeller domain of methanol dehydrogenase type%3B Beta-propeller domains of methanol dehydrogenase type

3.24

4.73

5.20

3.90

5.85

5.84

1.27

4.15

5.23

1.77

3.82

4.42

Zm00001d028756

Uncharacterized protein

3.32

3.54

3.90

3.82

4.15

4.29

0.59

2.21

2.75

0.77

1.58

1.76

Zm00001d049048

Heat shock protein binding protein

3.53

3.78

3.56

3.12

3.57

3.56

0.19

1.05

1.13

−0.03

1.08

1.30

Zm00001d014564

Oxygen-evolving enhancer protein 1–1 chloroplastic

2.82

3.50

3.71

3.48

4.53

4.31

−0.76

1.07

1.78

−0.13

0.73

1.01

Zm00001d034283

Photosystem I reaction center subunit III

2.69

3.61

3.83

3.13

4.79

4.59

−4.13

−1.72

−1.16

−0.81

0.15

0.26

Zm00001d025848

Plastid transcriptionally active 5

2.63

4.03

4.04

3.06

4.53

4.57

1.24

2.68

3.63

1.19

2.80

2.95

Zm00001d016991

Uncharacterized protein

2.42

3.01

3.29

3.29

4.16

3.91

−1.12

0.89

1.32

0.89

1.72

2.02

novel_G001848

Uncharacterized protein

−5.86

−5.83

−5.77

−5.90

−0.68

− 1.79

−8.19

−7.18

− 1.96

−0.28

0.04

−0.22

Zm00001d007623

Patatin-like protein 2

−5.22

−2.49

−2.90

−3.00

−0.49

− 1.67

2.73

3.24

2.85

−0.13

−0.21

0.78

novel_G001959

Hypothetical protein

−4.63

− 1.57

− 1.08

− 2.11

− 4.63

− 1.76

− 1.49

− 1.62

− 0.83

− 0.15

− 0.67

−0.69

Zm00001d015427

V-type proton atpase catalytic subunit A

−4.32

− 4.30

− 4.22

−3.57

−3.80

− 3.37

− 1.12

− 1.04

−1.08

− 0.46

− 0.46

− 0.49

novel_G001626

Translation initiation factor IF-2

− 3.79

− 3.76

− 0.21

− 2.87

− 0.36

− 3.48

− 2.44

− 2.27

− 0.12

− 0.18

− 0.08

−2.72

novel_G002132

Serine/threonine-protein phosphatase 7 long form homolog

−2.83

− 3.52

−0.46

− 4.61

−6.74

− 4.70

− 1.69

− 1.42

− 1.59

0.34

0.15

0.00

Zm00001d031785

Receptor-like protein kinase 4

−2.55

− 3.21

− 3.18

− 3.00

− 2.85

− 2.25

− 0.48

− 0.67

− 1.26

− 1.14

−2.00

− 1.21

Zm00001d007604

Patatin-like protein 2

−2.31

−3.17

−2.24

− 3.28

− 2.13

−2.40

4.32

3.43

4.32

− 0.86

− 1.34

− 0.78

Zm00001d046634

Uncharacterized protein

− 1.66

−2.24

− 3.07

− 2.85

− 3.03

− 1.70

−0.99

− 0.50

− 2.15

− 0.89

−0.81

− 1.27

Zm00001d050133

Homoserine dehydrogenase

−0.91

−5.52

−0.95

− 2.36

− 6.41

− 1.67

− 0.86

− 1.75

−0.79

− 0.27

−0.84

− 0.90