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Table 2 Escapees from 25 clonal single cell lymphoblasts

From: Human genes escaping X-inactivation revealed by single cell expression data

Gene symbola Gene Type Total iSNPs iSNPs Ratiob # cells with any observation # cells with paternal observationc Total Reads Paternal reads Paternal Ratiod Evidence poore
SLC25A6 PAR 34 0.882 18 16 9182 4887 0.532  
ZFX   48 0.438 21 12 11,697 2221 0.190  
CD99 PAR 38 0.605 17 10 5205 2027 0.389  
DDX3X   13 0.846 12 10 1003 367 0.366  
XIST ncRNA 20 0.950 10 10 1652 1640 0.993  
JPX ncRNA 19 0.579 10 8 1931 1039 0.538  
EIF2S3   10 0.600 10 6 1322 706 0.534  
DHRSX PAR 17 0.471 8 5 2379 1815 0.763  
SMC1A   9 0.556 9 5 807 511 0.633  
TRAPPC2   19 0.211 12 4 4427 790 0.178  
DMD   11 0.364 6 4 1533 160 0.104  
AKAP17A PAR 7 0.429 7 3 722 438 0.607  
AP1S2   3 1.000 3 3 99 54 0.545  
XIAP   19 0.158 6 3 1944 437 0.225  
P2RY8 PAR 13 0.308 5 2 843 454 0.539  
TMSB4X   5 0.400 5 2 372 70 0.188  
FAAH2   2 1.000 2 2 35 35 1.000  
DIAPH2   12 0.167 7 2 835 83 0.099  
CSF2RA PAR 3 1.000 1 1 58 56 0.966  
IL3RA PAR 13 0.231 6 1 837 120 0.143  
PRKX   2 1.000 1 1 36 36 1.000 *
FRMPD4   3 1.000 1 1 119 118 0.992  
SYAP1   3 0.333 2 1 190 57 0.300  
TXLNG   6 1.000 1 1 197 170 0.863  
OTC   4 1.000 1 1 44 44 1.000 *
KIF4A   3 0.333 3 1 265 27 0.102 *
TEX11   4 0.250 3 1 244 84 0.344 *
FTX ncRNA 8 0.125 3 1 716 35 0.049 *
BRWD3   4 0.500 3 1 88 48 0.545 *
ZCCHC16   2 0.500 1 1 57 32 0.561 *
  1. aOnly 30 genes that are supported by iSNP-based and read-based methods are listed. A full list of all genes (49) is available in Additional file 3: Table S4
  2. bFraction of iSNP supporting the paternal or biallelic observations out of total recorded iSNPs for a gene, for example in ZCCHC16 there were overall 2 iSNPs, one of them was paternal so the iSNPs ratio is 0.5
  3. cAn underline indicates that the single paternal observation originated from the outlier cell (SRR764803)
  4. dFraction of parental reads out of total read for a gene
  5. eEvidence poor apply for genes with a cell-based inconsistency or having < 50 paternal reads with only one supporting cell indicated by an asterisk