Table 2 Enriched gene ontology (GO) terms for meat quality traits measured in longissimus dorsi muscle
Trait | GO term | GO term name | p-value | Adjusted p-value | Number of genes in gene list | Number of genes in GO term |
|---|---|---|---|---|---|---|
Marbling | GO:0003677 | DNA binding | 5.4 × 10−3 | 2.0 × 10−1 | 35 | 313 |
Connective tissue | GO:0005789 | Endoplasmic reticulum membrane | 1.0 × 10−2 | 3.6 × 10− 1 | 23 | 214 |
Cooking loss | GO:0005789 | Endoplasmic reticulum membrane | 1.4 × 10−2 | 4.8 × 10−1 | 22 | 214 |
Juiciness | GO:0005789 | Endoplasmic reticulum membrane | 4.3 × 10−5 | 2.8 × 10 −3 | 17 | 218 |
Tenderness | GO:0005789 | Endoplasmic reticulum membrane | 4.2 × 10−3 | 3.2 × 10−1 | 20 | 214 |
WBSF | GO:0005789 | Endoplasmic reticulum membrane | 2.1 × 10−3 | 1.9 × 10−1 | 22 | 213 |
Marbling | GO:0005794 | Golgi apparatus | 1.2 × 10−2 | 2.8 × 10−1 | 40 | 334 |
Cooking loss | GO:0005525 | GTP binding | 1.2 × 10−2 | 8.0 × 10−1 | 17 | 179 |
Marbling | GO:0005525 | GTP binding | 4.0 × 10−2 | 5.9 × 10−1 | 20 | 175 |
Connective tissue | GO:0005743 | Mitochondrial inner membrane | 1.3 × 10−2 | 3.0 × 10−1 | 17 | 168 |
Connective tissue | GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | 4.3 × 10−4 | 3.0 × 10 −2 | 19 | 225 |
Marbling | GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | 4.2 × 10−3 | 3.1 × 10−1 | 22 | 223 |
Connective tissue | GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | 1.9 × 10−2 | 3.4 × 10−1 | 40 | 319 |
Flavor | GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | 7.9 × 10−4 | 6.2 × 10 −2 | 35 | 325 |
Flavor | GO:0006355 | Regulation of transcription, DNA-templated | 7.1 × 10−3 | 2.8 × 10−1 | 36 | 299 |
Cooking loss | GO:0003723 | RNA binding | 4.2 × 10−2 | 9.6 × 10−1 | 15 | 145 |
Marbling | GO:0006351 | Transcription, DNA-templated | 1.3 × 10−2 | 2.4 × 10−1 | 38 | 318 |