Table 3 Gene identification and percentage of genetic variance explained by windows associated with visual scores for conformation (C), precocity (P) and muscling (M), utilizing BayesC, considering phenotype as the dependent variable
From: Genome Association Study for Visual Scores in Nellore Cattle Measured at Weaning
BTA | Mb | % σ2a | Gene | Candidate | Description | ||
|---|---|---|---|---|---|---|---|
C | P | M | |||||
1 | 155.9–156.9 | 0.25 | 1 proteins | TBC1D5 | TBC1 domain family, member 5 | ||
3 | 0.4–1.4 | 0.41 | 0.29 | 10 proteins 1 tRNA 3 pseudogenes | CREG1 POU2F1 | Cellular repressor of E1A-stimulated; POU class 2 homeobox 1 | |
5 | 26.7–27.7 | 0.29 | 30 proteins | IGFBP6 | Insulin-like growth factor protein 6 | ||
5 | 118.7–119.7 | 0.29 | 0.26 | 0.24 | 3 proteins 4 ncRNA | MAPK11 MAPK12 | Mitogen-activated protein kinase 11 and 12 |
7 | 3.0–4.0 | 0.32 | 23 proteins 5 pseudogenes 2 ncRNA | LPAR2 NDUFA13 | Lysophosphatidic acid receptor 2; NADH dehydrogenase 1 alpha, 13 | ||
7 | 59.0–60.0 | 0.27 | 9 proteins 2 ncRNA | PPP1R39 | SH3 domain ring finger 2 | ||
7 | 108.8–109.8 | 0.32 | 2 proteins 1 tRNA 1 ncRNA | FBXL17 | F-Box And Leucine-Rich Repeat Protein 17 | ||
14 | 67.5–68.5 | 0.27 | 11 proteins 1 tRNA 2 ncRNA | STK3 | Serine/threonine kinase 3 | ||
15 | 31.7–32.7 | 0.27 | 5 proteins 1 miRNA | SORL1 | Sortilin-related receptor, L(DLR class) | ||
16 | 20.7–21.7 | 0.26 | 0.24 | 2 proteins 1 tRNA | ESRRG | Estrogen-related receptor gamma | |
16 | 80.7–81.7 | 0.30 | 7 proteins | TMEM9 | Transmembrane protein 9 | ||
19 | 36.0–37.0 | 0.23 | 23 proteins 3 ncRNA 4 pseudogenes | WFIKKN2 ACSF2 | Follistatin/kazal, immunoglobulin, kunitz and netrin domain; Hypothetical protein LOC768237 | ||
20 | 39.4–40.4 | 0.26 | 8 proteins 1 tRNA | C1QTNF3 | C1q factor related protein 3 | ||
23 | 24.1–25.1 | 0.35 | 0.24 | 16 proteins 1 tRNA 2 ncRNA 2 miRNA 3 Pseudogene | GSTA3 | Glutathione S-transferase, alpha 3 | |
Total | 1.87 | 1.62 | 1.87 | ||||