Table 1 Predicted miRNAs in lupin using ShortStack [54]

Lan-miR-1507a

miR1507

Scaffold_24_1:1525561–1,525,719

CCUCGUUCCAUACAUCAUCUAG

Lan-miR-1507b

Scaffold_56:1091677–1,091,814

UCUCACUCCAUACAUCGUCUCG

Lan-miR-1511

miR1511

Scaffold_14_1:1672129–1,672,224

AACCAGGCUCUGAUACCAUGA

Lan-miR-156a-1

miR156

Scaffold_23:1019283–1,019,373

UGACAGAAGAGAGUGAGCAC

Lan-miR-156a-2

Scaffold_24_1:1546940–1,547,026

UGACAGAAGAGAGUGAGCAC

Lan-miR-156a-3

Scaffold_166_14:63382–63,466

UUGACAGAAGAGAGUGAGCAC

Lan-miR-156b

Scaffold_33:2890279–2,890,538

UUGACAGAAGAGAGAGAGCAC

Lan-miR-157

miR157

Scaffold_347:76018–76,134

UUGACAGAAGAUAGAGAGCAC

Lan-miR-159-1

mir159

Scaffold_42_76:293925–294,101

UUUGGAUUGAAGGGAGCUCU

Lan-miR-159-2

Scaffold_122_37:106935–107,104

UUUGGAUUGAAGGGAGCUCU

Lan-miR-159-3

Scaffold_416:58038–58,209

UUUGGAUUGAAGGGAGCUCU

Lan-miR-162-1

miR162

Scaffold_24_1:803070–803,147

UCGAUAAACCUCUGCAUCCAG

Lan-miR-162-2

Scaffold_56:1749922–1,750,000

UCGAUAAACCUCUGCAUCCAG

Lan-miR-164-1

miR164

Scaffold_3_382:600977–601,066

UGGAGAAGCAGGGCACGUGCA

Lan-miR-164-2

Scaffold_40_1:135439–135,578

UGGAGAAGCAGGGCACGUGCA

Lan-miR-164-3

Scaffold_43:1566397–1,566,711

UGGAGAAGCAGGGCACGUGCA

Lan-miR-166-1

miR166

Scaffold_14_1:1049417–1,049,545

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-2

Scaffold_75_81:26353–26,441

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-3

Scaffold_75_81:26549–26,680

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-4

Scaffold_84:15176–15,316

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-5

Scaffold_112_9:89703–89,800

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-6

Scaffold_205:416775–417,037

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-7

Scaffold_211:92403–92,516

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-8

Scaffold_214:184166–184,347

UCGGACCAGGCUUCAUUCCCC

Lan-miR-166-9

Scaffold_384:367108–367,321

UCGGACCAGGCUUCAUUCCCC

Lan-miR-167a

miR167

Scaffold_13_17:116311–116,381

AUUAGAUCAUGUGGCAGUUUCACC

Lan-miR-167b

Scaffold_28_51:550481–550,563

UGAAGCUGCCAGCAUGAUCUGA

Lan-miR-167c

Scaffold_562:8600–8671

UGAAGCUGCCAGCAUGAUCUUA

Lan-miR-168

miR168

Scaffold_53:393759–393,871

UCGCUUGGUGCAGGUCGGGAA

Lan-miR-319

miR319

Scaffold_328:212542–212,615

UUUGGACUGAAGGGAGCUCCU

Lan-miR-390-1

miR390

Scaffold_94_15:916791–916,877

AAGCUCAGGAGGGAUAGCGCC

Lan-miR-390-2

Scaffold_232:453780–453,886

AAGCUCAGGAGGGAUAGCGCC

Lan-miR-393

mirR393

Scaffold_73:439631–439,729

AUCAUGCUAUCCCUUUGGAUU

Lan-miR-396a-1

miR396

Scaffold_24_1:1251989–1,252,099

UUCCACAGCUUUCUUGAACUG

Lan-miR-396a-2

Scaffold_28_10:16613–16,706

UUCCACAGCUUUCUUGAACUG

Lan-miR-396b-1

Scaffold_24_1:1243559–1,243,896

UUCCACAGCUUUCUUGAACUU

Lan-miR-396b-2

Scaffold_56:1360367–1,360,458

UUCCACAGCUUUCUUGAACUU

Lan-miR-396b-3

Scaffold_154_72:424217–424,325

UUCCACAGCUUUCUUGAACUU

Lan-miR-398

miR398

Scaffold_73:1163532–1,163,624

CGUGUUCUCAGGUCGCCCCUG

Lan-miR-399a

miR399

Scaffold_27_10:3938–4026

GGGCACAUCUCUUUUGGCAAU

Lan-miR-399b

Scaffold_13_17:180470–180,547

UGCCAAAGGAGAGUUGCCCUG

Lan-miR-399c

Scaffold_40_1:2272903–2,273,002

UGCCAAAGGAGAUUUGUCCUG

Lan-miR-403

miR403

Scaffold_115_1:411013–411,215

UUAGAUUCACGCACAAACUUG

NovmiR01

–

Scaffold_2_412:1857797–1,857,926

ACAACGUAUGAGACAAGAUCU

NovmiR02

–

Scaffold_54_50:762283–762,384

CCACUUCUUUCAAACAGGCCC

NovmiR03

–

Scaffold_60_104:6844–7014

AAAGAAGUGUAGGACAACAGAUGU

NovmiR04

–

Scaffold_66_204:47747–47,849

UUGCCUUAUUGAGUUUGAGUUG

NovmiR05

–

Scaffold_75_88:63943–64,304

UCACUCCAACUUUGACCUUCU

NovmiR06

–

Scaffold_95_88:201776–201,867

UUCGUUUGUGUGCAGACUCUGC

NovmiR07

–

Scaffold_117:636044–636,156

AGCGUAAACUGAUUAACCAAGGGU

NovmiR08

–

Scaffold_154_72:75651–75,880

AGAGGUGUAUGGCACAAGAGA

NovmiR09

–

Scaffold_221_1:266662–266,818

UAGGUCAAAAAUGGAGUGAUG

NovmiR10

–

Scaffold_221_1:662328–662,414

UGUCGCAGGAGUGAUAGUACC

NovmiR11

–

Scaffold_256:144745–144,827

UCCGUGUAUUUGUACAAUAUC

NovmiR12

–

Scaffold_460:184017–184,178

CUGCAUGUUGUCUUUGGCCACC

NovmiR13

–

Scaffold_162_2:128835–128,917

UGGACAACGACGAUCUUCGCC