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Table 5 RepeatMasker based analysis of repeating elements in the Incilaria fruhstorferi unigenes

From: Transcriptome analysis of air-breathing land slug, Incilaria fruhstorferi reveals functional insights into growth, immunity, and reproduction

 

Number of elementsa

Length occupied

Percentage of sequence

SINEs:

 

12

1932 bp

0.00%

ALUs

7

1593 bp

0.00%

MIRs

4

253 bp

0.00%

LINEs:

 

642

125,258 bp

0.19%

LINE1

78

11,676 bp

0.02%

LINE2

14

822 bp

0.00%

L3/CR1

19

1196 bp

0.00%

LTR elements:

 

28

5015 bp

0.01%

ERVL

6

435 bp

0.00%

ERVL-MaLRs

4

248 bp

0.00%

ERV_class I

8

3489 bp

0.01%

ERV_class II

6

501 bp

0.00%

DNA elements:

 

283

47,370 bp

0.07%

hAT-Charlie

122

15,876 bp

0.02%

TcMar-Tigger

55

7272 bp

0.01%

Unclassified:

 

2

102 bp

0.00%

Total interspersed repeats:

 

179,677 bp

0.27%

Small RNA:

 

55

4190 bp

0.01%

Satellites:

26

15,698 bp

0.02%

Simple repeats:

9067

407,633 bp

0.60%

Low complexity:

1481

77,420 bp

0.11%

  1. amost repeats fragmented by insertions or deletions have been counted as one element
  2. RepBase Update 20,160,829; RM database version 20,160,829
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BMC Genomics

ISSN: 1471-2164

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