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Fig. 1 | BMC Genomics

Fig. 1

From: Hierarchical cooperation of transcription factors from integration analysis of DNA sequences, ChIP-Seq and ChIA-PET data

Fig. 1

Schematic of the HidPET pipeline. TF represents the transcription factors. L represents the hierarchy of the TF network. “1D similarity” refers to the matrix for the network with TF similarities from the ChIP-Seq datasets in linear DNA sequence. “3D similarity” is the network with protein–protein interactions of TFs that are shared in both enhancers and promoters. PPI represents protein–protein interactions. Such PPI interactions include the intersection between those from STRING and BioGRID databases

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