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Table 2 Primers and probes used for qRT-PCR

From: Enrichment post-library preparation enhances the sensitivity of high-throughput sequencing-based detection and characterization of viruses from complex samples

Virus

Forward Primer Sequence

Reverse Primer Sequence

Probe Sequence

Reference

CHIKV (181/Clone 25)

AGCTCCGCGTCCTTTACCA

GCCAAATTGTCCTGGTCTTCCT

Express One SYBR Green I (Life Technologies)

[30]

DENV-1 (TH-SMAN)

GACACCACACCCTTTGGACAA

CACCTGGCTGTCACCTCCAT

FAM-AGAGGGTGTTTAAAGAGAAAGTTGACACGCG-TAMRA

[31]

DENV-2 (New Guinea C)

ACAGGCTATGGCACTGTTACGAT

TGCAGCAACACCATCTCATTG

FAM-AGTGCTCTCCAAGAACGGGCCTCG-TAMRA

[32, 33]

IFV-A – HA (A/Swine/Iowa/15/30)

CCAGTCACAATAGGAGAGTG

AAACCGGCAATGGCTCCAAA

Express One SYBR Green I (Life Technologies)

[34]

ZIKV (MR766 and R116265)

AARTACACATACCARAACAAAGTGGTa

TCCRCTCCCYCTYTGGTCTTG

Express One SYBR Green I (Life Technologies)

[35]

  1. aboldface T was modified from originally published R