Skip to main content
Fig. 3 | BMC Genomics

Fig. 3

From: Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp

Fig. 3

Type III effector (T3E) profile of the 52 Pseudomonas syringae strains used in this study. Strains sequenced in this study are indicated in bold. The amino acid sequence of a total of 80 T3E (Additional file 1: Table S2) was obtained from the Hop database available at the P. syringae Genome Resources website (www.pseudomonas-syringae.org) and used as query in a tBLASTn analysis to retrieve the corresponding locus tags to be used in EDGAR v.2.2 [53] for search of the reciprocal best hit on the selected genomes. Black squares indicate presence whereas white squares indicate absence of the T3E. For strains sequenced in this study using PacBio RSII as well as for the complete genomes P. syringae pv. tomato DC3000 and P. syringae pv. phaseolicola 1448a, grey squared indicates T3E located on plasmids. Strains are ordered based on the core-genome phylogeny constructed in Fig. 1 together with phenotypical analysis whereas T3E are ordered based on their abundance from left to right in descending order. The strain names refer to the code field from Table 1. Phylogroups are reported on the left and are separated by horizontal dashed lines whereas clades are reported on the right and are separated by horizontal dotted lines. The last column indicates the total number of T3E per strain. CEL: the T3E located in the conserved effector locus

Back to article page