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Fig. 1 | BMC Genomics

Fig. 1

From: In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Fig. 1

Summary of characterization of R. irregularis DCL including results of in silico gene expression, qRT-PCR, protein domains and phylogenetic analyses. Proteins are discernible by species according to a two-letter prefix: Mo = Magnaporthe oryzae,Nc = Neurospora crassa, Mc = Mucor circinelloides, Sp = Schizosaccharomyces pombe, Cp = Cryphonectria parasitica. The Rhizophagus irregularis protein is identified by JGI numeric code. Protein ID (NCBI): MoMDL1 = XP_003714515.1, MoMDL2 = XP_003715365.1, NcSMS-3 = XP_961898.1, NcDCL-2 = XP_963538.3, SpDCR1 = NP_588215.2, McDCL-1 = CAK32533.1, McDCL-2 = CAZ65730.1, CpDCL-1 = ABB00356.1, CpDCL-2 = ABB00357.1. The numbers at the nodes are bootstrap values (%) for 1000 replicates. ERM = extra radical mycelium, IRM = intra radical mycelium. Tree was rooted using Drosophila melanogster Dicer 1 (NCBI Reference Sequence: NP_524453.1). Figure was generated with Evolview v2

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BMC Genomics

ISSN: 1471-2164

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