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Fig. 2 | BMC Genomics

Fig. 2

From: In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Fig. 2

Summary of characterization of Rhizophagus irregularis AGO-like proteins including results of in silico gene expression, qRT-PCR, protein domains and phylogenetic analyses. Proteins are discernible by species according to a two-letter prefix: Mo = Magnaporthe oryzae,Nc = Neurospora crassa,Mc = Mucor circinelloides, Sp = Schizosaccharomyces pombe, Cp = Cryphonectria parasitica. R. irregularis proteins are identified by JGI numeric codes. Protein ID (NCBI or JGI): MoAGO1 = XP_003716704.1, MoAGO2 = XP_003717504.1, MoAGO3 = XP_003714217.1, NcQDE-2 = XP_011394903.1, NcSMS-2 = EAA29350.1, SpAGO1 = O74957.1, McAGO-1 = 104,161, McAGO-2 = 195,366, McAGO-3 = 104,163, CpAGL1 = ACY36939.1, CpAGL2 = ACY36940.1, CpAGL3 = ACY36941.1, CpAGL4 = ACY36942.1. The numbers at the nodes are bootstrap values (%) for 1000 replications. ERM = extra radical mycelium, IRM = intra radical mycelium. Tree was rooted using Arabidopsis thaliana Argonaute 6 (NCBI Reference Sequence: NP_180853.2). Figure was generated with Evolview v2

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BMC Genomics

ISSN: 1471-2164

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