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Fig. 3 | BMC Genomics

Fig. 3

From: In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Fig. 3

Summary of characterization of Rhizophagus irregularis RdRp including results of in silico gene expression, qRT-PCR, protein domains and phylogenetic analyses. Proteins are discernible by species according to a two-letter prefix: Mo = Magnaporthe oryzae,Nc = Neurospora crassa, Mc = Mucor circinelloides, Sp = Schizosaccharomyces pombe, Cp = Cryphonectria parasitica. R. irregularis proteins are identified by JGI numeric codes. Protein ID (NCBI or JGI): MoRdRP1 = XP_003721007.1, MoRdRP2 = XP_003711624.1, MoRdRP3 = XP_003712093.1, NcQDE-1 = EAA29811.1, NcSAD-1 = XP_964248.3, NcRRP-3 = XP_963405.1, SpRDP1 = NP_001342838.1, McRdRP-1 = 111,871, McRdRP-2 = 104,159, CpRDR1 = 270,014, CpRDR2 = 35,624, CpRDR3 = 10,929, CpRDR4 = 339,656. The numbers at the nodes are bootstrap values (%) for 1000 replications. ERM = extra radical mycelium, IRM = intra radical mycelium. Tree was rooted using Caenorhabditis elegans RdRP (NCBI Reference Sequence: NP_495713.2). Figure was generated with Evolview v2

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BMC Genomics

ISSN: 1471-2164

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