Table 5 ROH islands, shared by more than 50% (ROH freq.) of the Lipizzan horses from the Slovakian stud farm Topol’čianky and the annotated genes in corresponding regions
Chr. | Begin | End | Length (kb) | ROH freq. | Known genes |
|---|---|---|---|---|---|
11 | 24,140.999 | 24,793.573 | 652.6 | 0.598 | COPZ2, CBX1,SNX11, HOXB1, HOXB2, HOXB3, HOXB5, HOXB6, HOXB7, HOXB8, HOXB13, TTLL6 |
11 | 31,000.312 | 31,347.338 | 347.0 | 0.552 | C11H17orf67, DGKE |
11 | 31,507.758 | 31,942.748 | 435.0 | 0.567 | AKAP1, MSI2 |
14 | 34,651.534 | 35,086.649 | 435.1 | 0.609 | SPRY4, NDFIP1, GNPDA1, RNF14 |
16 | 39,675.098 | 39,775.712 | 100.6 | 0.507 | SETD2 |
22 | 47,905.031 | 48,488.839 | 583.8 | 0.576 | CDH4, TAF4, LSM14B, PSMA7, SS18L1, MTG2, HRH3, OSBPL2, ADRM1, LAMA5, CABLES2, RBBP8NL, GATA5 |