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Table 1 List of the 47 Xylella genome sequences used in this study

From: Identification of genetic relationships and subspecies signatures in Xylella fastidiosa

Genotype Strain STa Host plant Country (year)b Accession number Reference
X. fastidiosa ATCC 35879 2 Vitis vinifera FL, USA (1987) NZ_JQAP00000000 Unpublished
subsp. DSM 10026 2 Vitis vinifera FL, USA (1987) NZ_FQWN01000006 Unpublished
fastidiosa CFBP 7969 2 Vitis rotundifolia NC, USA (1985) PHFQ00000000 This study
  CFBP 7970 2 Vitis vinifera FL, USA (1987) PHFR00000000 This study
  CFBP 8071 1 Prunus dulcis CA, USA (1987) PHFP00000000 This study
  CFBP 8073 75 Coffea canephora Mexico (2012) LKES00000000 [11]
  CFBP 8082 2 Ambrosia artemifolia FL, USA (1983) PHFT00000000 This study
  CFBP 8351 1 Vitis sp. CA, USA (1993) PHFU00000000 This study
  EB92–1 1 Sambucus nigra FL, USA (1992) AFDJ00000000 [67]
  GB514 1 Vitis vinifera TX, USA (2007) NC_017562 [68]
  M23 1 Prunus dulcis CA, USA (2003) NC_010577 [69]
  Stag’s Leap 1 Vitis vinifera CA, USA (1994) LSMJ010000 [70]
  Temecula1 1 Vitis vinifera CA, USA 1998) NC_004556 [58]
X. f. subsp. ATCC 35871 41 Prunus salicina CA, USA (1983) NZ_AUAJ00000000 Unpublished
multiplex BB01 42 Vaccinium corymbosum GA, USA (2016) NZ_MPAZ01000000 [71]
  CFBP 8078 51 Vinca sp. FL, USA (1983) PHFS00000000 This study
  CFBP 8416 7 Polygala myrtifolia COR, FR (2015) LUYC00000000 [2]
  CFBP 8417 6 Spartium junceum COR, FR (2015) LUYB00000000 [2]
  CFBP 8418 6 Spartium junceum COR, FR (2015) LUYA00000000 [2]
  Dixon 6 Prunus dulcis CA, USA (1994) AAAL00000000 [72]
  Griffin-1 7 Quercus rubra GA, USA (2006) AVGA00000000 [73]
  M12 7 Prunus dulcis CA, USA (2003) NC_010513 [69]
  Sy-VA 8 Platanus occidentalis VA, USA (2002) JMHP00000000 [74]
X. f. subsp. Ann-1 5 Nerium oleander CA, USA (1995) CP006696 [75]
sandyi CFBP 8356 72 Coffea arabica Costa Rica (2015) PHFV00000000 This study
  Co33 72 Coffea arabica Costa Rica (2014) LJZW00000000 [76]
X. f. subsp. Mul0034 30 Morus alba USA (2003) CP006740 [77]
morus Mul-MD 29 Morus alba MD, USA (2011) AXDP00000000 [77]
X. f. subsp. 32 16 Coffea arabica Brazil (1997) AWYH00000000 [78]
pauca 3124 16 Coffea sp. Brazil (2009) CP009829 Unpublished
  11,399 12 Citrus cinensis Brazil (1996) NZ_JNBT01000030 [79]
  6c 14 Coffea arabica Brazil (1997) AXBS00000000 [78]
  9a5c 13 Citrus cinensis Brazil (1992) NC_002488 [57]
  CFBP 8072 74 Coffea Arabica Ecuador (2012) LKDK00000000 [11]
  CoDiRO 53 Catharanthus roseus c Italy (2013) JUJW00000000 [33]
  COF0324 14 Coffea sp. Costa Rica (2006) LRVG01000000 Unpublished
  COF0407 53 Coffea sp. Costa Rica (2009) LRVJ00000000 Unpublished
  CVC0251 12 Citrus cinensis Brazil (1999) LRVE01000000 Unpublished
  CVC0256 12 Citrus cinensis Brazil (1999) LRVF01000000 Unpublished
  Fb7 69 Citrus sinensis Argentina (1998) CP010051 Unpublished
  Hib4 70 Hibiscus fragilis Brazil (2000) CP009885 Unpublished
  J1a12 12 Citrus sp. Brazil (2001) CP009823 Unpublished
  OLS0478 53 Nerium oleander Costa Rica (2010) LRVI00000000 Unpublished
  OLS0479 53 Nerium oleander Costa Rica (2010) LRVH00000000 Unpublished
  Pr8x 14 Prunus (Plum) Brazil (2009) CP009826 Unpublished
  U24D 13 Citrus sinensis Brazil (2000) CP009790 Unpublished
X. taiwanensis PLS 229 Pyrus pyrifolia Taiwan (−) JDSQ00000000 [80]
  1. aSequence Type determined following the MSLT scheme dedicated to X. fastidiosa [52]
  2. bExact year of isolation or oldest year of literature citing the stain
  3. cDNA was recovered from infected periwinkle. This genome is the one of the CoDiRO strain, the agent responsible for the Olive Quick Decline Syndrome in Italy (46)