Table 1 List of the 47 Xylella genome sequences used in this study
From: Identification of genetic relationships and subspecies signatures in Xylella fastidiosa
Genotype | Strain | STa | Host plant | Country (year)b | Accession number | Reference |
|---|---|---|---|---|---|---|
X. fastidiosa | ATCC 35879 | 2 | Vitis vinifera | FL, USA (1987) | NZ_JQAP00000000 | Unpublished |
subsp. | DSM 10026 | 2 | Vitis vinifera | FL, USA (1987) | NZ_FQWN01000006 | Unpublished |
fastidiosa | CFBP 7969 | 2 | Vitis rotundifolia | NC, USA (1985) | PHFQ00000000 | This study |
| Â | CFBP 7970 | 2 | Vitis vinifera | FL, USA (1987) | PHFR00000000 | This study |
| Â | CFBP 8071 | 1 | Prunus dulcis | CA, USA (1987) | PHFP00000000 | This study |
| Â | CFBP 8073 | 75 | Coffea canephora | Mexico (2012) | LKES00000000 | [11] |
| Â | CFBP 8082 | 2 | Ambrosia artemifolia | FL, USA (1983) | PHFT00000000 | This study |
| Â | CFBP 8351 | 1 | Vitis sp. | CA, USA (1993) | PHFU00000000 | This study |
|  | EB92–1 | 1 | Sambucus nigra | FL, USA (1992) | AFDJ00000000 | [67] |
| Â | GB514 | 1 | Vitis vinifera | TX, USA (2007) | NC_017562 | [68] |
| Â | M23 | 1 | Prunus dulcis | CA, USA (2003) | NC_010577 | [69] |
|  | Stag’s Leap | 1 | Vitis vinifera | CA, USA (1994) | LSMJ010000 | [70] |
| Â | Temecula1 | 1 | Vitis vinifera | CA, USA 1998) | NC_004556 | [58] |
X. f. subsp. | ATCC 35871 | 41 | Prunus salicina | CA, USA (1983) | NZ_AUAJ00000000 | Unpublished |
multiplex | BB01 | 42 | Vaccinium corymbosum | GA, USA (2016) | NZ_MPAZ01000000 | [71] |
| Â | CFBP 8078 | 51 | Vinca sp. | FL, USA (1983) | PHFS00000000 | This study |
| Â | CFBP 8416 | 7 | Polygala myrtifolia | COR, FR (2015) | LUYC00000000 | [2] |
| Â | CFBP 8417 | 6 | Spartium junceum | COR, FR (2015) | LUYB00000000 | [2] |
| Â | CFBP 8418 | 6 | Spartium junceum | COR, FR (2015) | LUYA00000000 | [2] |
| Â | Dixon | 6 | Prunus dulcis | CA, USA (1994) | AAAL00000000 | [72] |
| Â | Griffin-1 | 7 | Quercus rubra | GA, USA (2006) | AVGA00000000 | [73] |
| Â | M12 | 7 | Prunus dulcis | CA, USA (2003) | NC_010513 | [69] |
| Â | Sy-VA | 8 | Platanus occidentalis | VA, USA (2002) | JMHP00000000 | [74] |
X. f. subsp. | Ann-1 | 5 | Nerium oleander | CA, USA (1995) | CP006696 | [75] |
sandyi | CFBP 8356 | 72 | Coffea arabica | Costa Rica (2015) | PHFV00000000 | This study |
| Â | Co33 | 72 | Coffea arabica | Costa Rica (2014) | LJZW00000000 | [76] |
X. f. subsp. | Mul0034 | 30 | Morus alba | USA (2003) | CP006740 | [77] |
morus | Mul-MD | 29 | Morus alba | MD, USA (2011) | AXDP00000000 | [77] |
X. f. subsp. | 32 | 16 | Coffea arabica | Brazil (1997) | AWYH00000000 | [78] |
pauca | 3124 | 16 | Coffea sp. | Brazil (2009) | CP009829 | Unpublished |
| Â | 11,399 | 12 | Citrus cinensis | Brazil (1996) | NZ_JNBT01000030 | [79] |
| Â | 6c | 14 | Coffea arabica | Brazil (1997) | AXBS00000000 | [78] |
| Â | 9a5c | 13 | Citrus cinensis | Brazil (1992) | NC_002488 | [57] |
| Â | CFBP 8072 | 74 | Coffea Arabica | Ecuador (2012) | LKDK00000000 | [11] |
| Â | CoDiRO | 53 | Catharanthus roseus c | Italy (2013) | JUJW00000000 | [33] |
| Â | COF0324 | 14 | Coffea sp. | Costa Rica (2006) | LRVG01000000 | Unpublished |
| Â | COF0407 | 53 | Coffea sp. | Costa Rica (2009) | LRVJ00000000 | Unpublished |
| Â | CVC0251 | 12 | Citrus cinensis | Brazil (1999) | LRVE01000000 | Unpublished |
| Â | CVC0256 | 12 | Citrus cinensis | Brazil (1999) | LRVF01000000 | Unpublished |
| Â | Fb7 | 69 | Citrus sinensis | Argentina (1998) | CP010051 | Unpublished |
| Â | Hib4 | 70 | Hibiscus fragilis | Brazil (2000) | CP009885 | Unpublished |
| Â | J1a12 | 12 | Citrus sp. | Brazil (2001) | CP009823 | Unpublished |
| Â | OLS0478 | 53 | Nerium oleander | Costa Rica (2010) | LRVI00000000 | Unpublished |
| Â | OLS0479 | 53 | Nerium oleander | Costa Rica (2010) | LRVH00000000 | Unpublished |
| Â | Pr8x | 14 | Prunus (Plum) | Brazil (2009) | CP009826 | Unpublished |
| Â | U24D | 13 | Citrus sinensis | Brazil (2000) | CP009790 | Unpublished |
X. taiwanensis | PLS 229 | – | Pyrus pyrifolia | Taiwan (−) | JDSQ00000000 | [80] |