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Table 5 Specific signatures in 16S rRNA nucleotide sequences to discriminate X. fastidiosa subspecies

From: Identification of genetic relationships and subspecies signatures in Xylella fastidiosa

X. fastidiosa subsp. (nb of genome sequences)

SNPs at the designed positionsa

75a

76

151

455

474

1127

1264

1340

fastidiosa (n = 13)

C

A

C

G

–

G

A

C

morus (n = 2)

C

A

C

G

–

T

A

C

multiplex (n = 10)

C

A

T

A

–

G

G

C

sandyi (n = 1)b

C

A

T

A

T

G

A

C

sandyi-like (n = 2)c

T

A

C

A

–

G

G

C

pauca (n = 18)

C

G

T

A

–

G

A

T

  1. arefers to SNP positions within the alignment of the copies of 16S rRNA (Additional file 4)
  2. brefers to Ann-1strain only
  3. crefers to strains CFBP 8356 and CO33 strains
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BMC Genomics

ISSN: 1471-2164

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