Table 7 Main Gene Ontologies (GO) identified as enriched in almost all the subspecies for the CDS harboring specific mers
From: Identification of genetic relationships and subspecies signatures in Xylella fastidiosa
GO term1 | Description | FAS2,3 | FAS22,3 | MUL2,3 | PAU2,3 | SAN2,3 | SAN22,3 |
|---|---|---|---|---|---|---|---|
GO:0003824 | catalytic activity | 473/368 669/912 1.64e-7/7.48e-11 | 343/498 468/1113 4.79e-5/4.20e-8 | 358/308 761/935 0.0082/1.18e-4 | 672/143 1039/796 4.35e-37/3.55e-40 | 779/86 1627/311 0.0108/1.34e-5 | 630/229 1016/670 1.05e-7/4.37e-11 |
GO:0000166 | nucleotide binding | 138/96 1004/1184 0.0246/1.46e-4 | 106/128 705/1483 0.0115/7.90e-5 | 143/90 976/1153 9.99e-4/8.70e-6 | 240/32 1471/907 2.40e-18/2.18e-20 | – | 228/54 1418/845 2.30e-7/3.81e-10 |
GO:0017076 | purine nucleotide binding | 109/73 1033/1207 0.0469/3.69e-4 | 87/95 724/1516 0.0077/3.91e-5 | 118/70 1001/1173 0.0012/1.25e-5 | 197/20 1514/919 4.04e-18/4.45e-20 | – | 181/44 1465/855 2.08e-5/7.77e-8 |
GO:0032553 | ribonucleotide binding | 114/74 1028/1206 0.0246/1.33e-4 | 89/99 722/1512 0.0086/5.12e-5 | 121/72 998/1171 0.0011/1.12e-5 | 203/23 1508/916 2.25e-17/2.67e-19 | – | 186/48 1460/851 5.83e-5/2.89e-7 |
GO:0032555 | purine ribonucleotide binding | 108/73 1034/1207 0.0469/4.80e-4 | 87/94 724/1517 0.0060/2.64e-5 | 117/70 1002/1173 0.0015/1.70e-5 | 197/19 1514/920 1.07e-18/8.34e-21 | – | 181/44 1465/855 2.08e-5/7.77e-8 |
GO:1901265 | nucleoside phosphate binding | 138/96 1004/1184 0.0246/1.46e-4 | 106/128 705/1483 0.0115/7.90e-5 | 143/90 976/1153 9.99e-4/8.70e-6 | 240/32 1471/907 2.40e-18/2.18e-20 | – | 228/54 1418/845 2.30e-7/3.81e-10 |
GO:0036094 | small molecule binding | 153/103 989/1177 0.0077/2.11e-5 | 114/142 697/1469 0.0142/1.10e-4 | 155/100 964/1143 8.42e-4/5.87e-6 | 266/33 1445/906 1.49e-21/6.68e-24 | – | 251/62 1395/837 2.30e-7/2.82e-10 |
GO:0043168 | anion binding | 140/87 1002/1193 0.0030/4.98e-6 | 102/125 709/1486 0.0206/2.07e-4 | 140/88 979/1155 0.0010/9.88e-6 | 242/27 1469/912 4.32e-21/2.11e-23 | – | 226/59 1420/840 7.16e-6/1.77e-8 |
GO:0097367 | carbohydrate derivative binding | 117/81 1025/1199 0.0469/4.68e-4 | 94/104 717/1507 0.0060/2.74e-5 | 126/73 993/1170 5.43e-4/2.60e-6 | 209/23 1502/916 2.40e-18/2.31e-20 | – | 190/50 1456/849 7.27e-5/3.90e-7 |
GO:0005488 | binding | 323/277 819/1003 0.0253/1.61e-4 | 247/353 564/1258 0.0020/5.52e-6 | 296/245 823/998 0.0078/1.06e-4 | 547/140 1164/799 1.14e-20/6.54e-23 | – | 502/187 1144/712 3.03e-5/1.25e-7 |
GO:0008152 | metabolic process | 465/411 677/869 0.0055/1.26e-5 | 355/521 456/1090 4.79e-5/4.37e-8 | 397/331 722/912 5.94e-4/3.44e-6 | 723/168 988/771 4.40e-36/5.38e-39 | – | 644/264 1002/635 1.36e-4/7.91e-7 |