Table 3 Frequency of motifs in each expression class
Genes with Motifs | VH (n = 338) | H (n = 778) | M (n = 4475) | L (n = 1597) |
|---|---|---|---|---|
M1 (Single occurrence) | 19 (6%) | 116 (15%) | 684 (15%) | 416 (26%) |
M1 (All combinations) | 188 | 406 | 1990 | 704 |
M1 (Average per gene) | 1.58 | 1.48 | 1.23 | 1.15 |
M2 (Single occurrence) | 16 (5%) | 041 (05%) | 234 (05%) | 123 (08%) |
M2 (All combinations) | 154 | 133 | 558 | 164 |
M2 (Average per gene) | 0.55 | 0.21 | 0.13 | 0.11 |
M5 (Single occurrence) | 16 (5%) | 154 (20%) | 820 (18%) | 400 (25%) |
M5 (All combinations) | 159 | 300 | 1402 | 441 |
M5 (Average per gene) | 0.56 | 0.48 | 0.35 | 0.30 |
M4 (Single occurrence) | 14 (4%) | NE | NE | NE |
M4 (All combinations) | 132 | – | – | – |
M4 (Average per gene) | 0.60 | – | – | – |
M6 (Single occurrence) | 06 (2%) | NE | NE | NE |
M6 (All combinations) | 63 | – | – | – |
M6 (Average per gene) | 0.21 | – | – | – |
M10 (Single occurrence) | 12 (4%) | 111 (14%) | 816 (18%) | NE |
M10 (All combinations) | 106 | 264 | 1442 | – |
M10 (Average per gene) | 0.55 | 0.60 | 0.57 | – |
M11 (Single occurrence) | 06 (2%) | 035 (04%) | 170 (04%) | NE |
M11 (All combinations) | 93 | 128 | 422 | – |
M11 (Average per gene) | 0.28 | 0.17 | 0.10 | – |
No Motif Predicted | 17 (5%) | 102 (13%) | 916 (20%) | 617 (39%) |
In combinations | 232 (69%) | 219 (28%) | 835 (19%) | 041 (3%) |
Most frequent combination of motifs | ||||
 M2 M5 | 7% [0.6%] | 3% [0.2%] | 2% [0.3%] | 3% [0.4%] |
 M10 M5 | 2% [0.4%] | 8% [4%] | 7% [1%] | NA |
 M2 M4 | 3% [0.3%] | NA | NA | NA |
 M10 M2 | 3% | 4% | 3% | NA |
 M11 M5 | 3% | 3% | 2% | NA |
 M10 M11 | 2% | 3% | 2% | NA |
 M4 M5 M6 | 4% | NA | NA | NA |
 M4 M5 | 4% | NA | NA | NA |