Table 1 Overview of D. subobscura nuclear pseudochromosome and mitochondrial reference genome assembly (N50: length of the contig for which 50% of the total assembly length is contained in scaffolds of that size or larger; L50: ranking order of the scaffold that defines the N50 length; lengths are in bp)
Component | Length | No. of scaffolds | Largest scaffold | L50 | N50 | Gene models | % repetitive |
|---|---|---|---|---|---|---|---|
Nuclear | 124,861,819 | 63 | 15,119,984 | 6 | 8,236,782 | 13,181 | 11.7% |
 Dot | 1,375,632 | 1 | 1,375,632 | 1 | 1,375,632 | 91 | 28.9% |
 A | 22,857,882 | 24 | 11,265,230 | 2 | 1,077,607 | 2322 | 14.6% |
 J | 23,583,473 | 8 | 15,119,984 | 1 | 15,119,984 | 2452 | 11.1% |
 U | 25,800,175 | 5 | 11,274,558 | 3 | 9,313,524 | 2496 | 10.3% |
 E | 20,818,511 | 7 | 8,236,782 | 2 | 5,954,457 | 2591 | 11.3% |
 O | 30,426,146 | 18 | 9,011,354 | 3 | 4,063,992 | 3229 | 10.6% |
Mitogenome | 15,764 | 1 | 15,764 | 1 | 15,764 | 37 | Â |