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Table 3 Genes of the tad operon of ΔlitR/wt and ΔrpoQ/wt at low and high cell densities

From: Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida

VSAL_ID LCD HCD Gene Function
  FC p-adjusted FC p-adjusted   
ΔrpoQ/wt
 VSAL_II0366 25.55 1.58E-95 11.88 1.16E-09   fimbrial protein, Flp/Fap pilin component
 VSAL_II0367 24.82 7.13E-119 10.45 8.51E-10 tadV type IV leader peptidase
 VSAL_II0368 14.23 1.86E-123 6.78 3.37E-14 rcpC putative Flp pilus assembly protein
 VSAL_II0369 10.94 5.17E-98 7.24 4.39E-16 rcpA type II/III secretion system protein
 VSAL_II0370 14.26 3.98E-113 7.42 5.14E-10 rcpB putative lipoprotein
 VSAL_II0371 13.54 2.15E-108 6.16 NA tadZ type II secretion system protein Z
 VSAL_II0372 12.73 6.04E-118 5.63 1.76E-07 tadA type II/IV secretion system protein, ATP binding domain
 VSAL_II0373 10.33 1.16E-86 6.99 4.54E-16 tadB bacterial type II secretion system protein F
 VSAL_II0374 4.65 9.46E-64 1.49 5.18E-01 tadC bacterial type II secretion system protein F
 VSAL_II0375 2.94 1.16E-29 1.18 7.92E-01 tadD putative secretion system protein
 VSAL_II0376 3.17 1.38E-31 1.16 8.00E-01 tadE membrane associated secretion system protein
 VSAL_II0377 3.11 9.37E-30 1.06 9.18E-01 tadF membrane associated secretion system protein
 VSAL_II0378 3.04 1.68E-30 1.11 8.50E-01 tadG membrane associated secretion system protein
ΔlitR/wt
 VSAL_II0366 12.23 7.54E-75 10.24 2.94E-13   fimbrial protein, Flp/Fap pilin component
 VSAL_II0367 8.59 3.94E-59 6.44 1.20E-12 tadV type IV leader peptidase
 VSAL_II0368 4.30 1.07E-38 2.42 NA rcpC putative Flp pilus assembly protein
 VSAL_II0369 3.45 4.58E-30 3.10 6.14E-05 rcpA type II/III secretion system protein
 VSAL_II0370 4.67 1.77E-37 2.74 0.009798979 rcpB putative lipoprotein
 VSAL_II0371 3.73 1.31E-24 2.38 0.004220895 tadZ type II secretion system protein Z
 VSAL_II0372 3.67 2.53E-27 2.43 0.000108788 tadA type II/IV secretion system protein, ATP binding domain
 VSAL_II0373 2.49 1.89E-11 2.53 NA tadB bacterial type II secretion system protein F
 VSAL_II0374 1.88 7.21E-09 1.06 0.926675356 tadC bacterial type II secretion system protein F
 VSAL_II0375 1.32 0.031001079 1.29 0.372370396 tadD putative secretion system protein
 VSAL_II0376 1.45 0.001283239 1.29 0.376863481 tadE membrane associated secretion system protein
 VSAL_II0377 1.53 0.000365049 1.35 0.33429395 tadF membrane associated secretion system protein
 VSAL_II0378 1.35 0.006750764 1.35 0.304804669 tadG membrane associated secretion system protein
  1. Values indicated in bold are differentially expressed genes with fold change values (FC) that are ≥2 and ≤ −2, p-value ≤0.05