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Table 3 Genes of the tad operon of ΔlitR/wt and ΔrpoQ/wt at low and high cell densities

From: Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida

VSAL_ID

LCD

HCD

Gene

Function

 

FC

p-adjusted

FC

p-adjusted

  

ΔrpoQ/wt

 VSAL_II0366

25.55

1.58E-95

11.88

1.16E-09

 

fimbrial protein, Flp/Fap pilin component

 VSAL_II0367

24.82

7.13E-119

10.45

8.51E-10

tadV

type IV leader peptidase

 VSAL_II0368

14.23

1.86E-123

6.78

3.37E-14

rcpC

putative Flp pilus assembly protein

 VSAL_II0369

10.94

5.17E-98

7.24

4.39E-16

rcpA

type II/III secretion system protein

 VSAL_II0370

14.26

3.98E-113

7.42

5.14E-10

rcpB

putative lipoprotein

 VSAL_II0371

13.54

2.15E-108

6.16

NA

tadZ

type II secretion system protein Z

 VSAL_II0372

12.73

6.04E-118

5.63

1.76E-07

tadA

type II/IV secretion system protein, ATP binding domain

 VSAL_II0373

10.33

1.16E-86

6.99

4.54E-16

tadB

bacterial type II secretion system protein F

 VSAL_II0374

4.65

9.46E-64

1.49

5.18E-01

tadC

bacterial type II secretion system protein F

 VSAL_II0375

2.94

1.16E-29

1.18

7.92E-01

tadD

putative secretion system protein

 VSAL_II0376

3.17

1.38E-31

1.16

8.00E-01

tadE

membrane associated secretion system protein

 VSAL_II0377

3.11

9.37E-30

1.06

9.18E-01

tadF

membrane associated secretion system protein

 VSAL_II0378

3.04

1.68E-30

1.11

8.50E-01

tadG

membrane associated secretion system protein

ΔlitR/wt

 VSAL_II0366

12.23

7.54E-75

10.24

2.94E-13

 

fimbrial protein, Flp/Fap pilin component

 VSAL_II0367

8.59

3.94E-59

6.44

1.20E-12

tadV

type IV leader peptidase

 VSAL_II0368

4.30

1.07E-38

2.42

NA

rcpC

putative Flp pilus assembly protein

 VSAL_II0369

3.45

4.58E-30

3.10

6.14E-05

rcpA

type II/III secretion system protein

 VSAL_II0370

4.67

1.77E-37

2.74

0.009798979

rcpB

putative lipoprotein

 VSAL_II0371

3.73

1.31E-24

2.38

0.004220895

tadZ

type II secretion system protein Z

 VSAL_II0372

3.67

2.53E-27

2.43

0.000108788

tadA

type II/IV secretion system protein, ATP binding domain

 VSAL_II0373

2.49

1.89E-11

2.53

NA

tadB

bacterial type II secretion system protein F

 VSAL_II0374

1.88

7.21E-09

1.06

0.926675356

tadC

bacterial type II secretion system protein F

 VSAL_II0375

1.32

0.031001079

1.29

0.372370396

tadD

putative secretion system protein

 VSAL_II0376

1.45

0.001283239

1.29

0.376863481

tadE

membrane associated secretion system protein

 VSAL_II0377

1.53

0.000365049

1.35

0.33429395

tadF

membrane associated secretion system protein

 VSAL_II0378

1.35

0.006750764

1.35

0.304804669

tadG

membrane associated secretion system protein

  1. Values indicated in bold are differentially expressed genes with fold change values (FC) that are ≥2 and ≤ −2, p-value ≤0.05