Table 4 DEGs of syp locus at low and high cell densities in the ΔrpoQ/wt
VSAL_ID | LCD | HCD | Gene | Function | ||
|---|---|---|---|---|---|---|
FC | p-adjusted | FC | p-adjusted | |||
VSAL_II0295 | 1.22 | 0.74710921 | 2.189 | 0.07468146 | sypR | sugar transferase |
VSAL_II0296 | 1.07 | 0.89636775 | 2.585 | 0.00426114 | sypQ | putative transmembrane glycosyl transferase |
VSAL_II0297 | 1.10 | 0.84634234 | 3.182 | 0.0001044 | sypP | putative glycosyl transferase |
VSAL_II0298 | −1.05 | 0.91873517 | 2.462 | 0.04236082 | sypO | putative membrane protein |
VSAL_II0299 | 1.14 | 0.81791828 | 2.189 | 0.11185209 | sypN | putative glycosyl transferases |
VSAL_II0300 | 1.43 | 0.17621734 | 3.160 | 0.00642603 | sypM | hypothetical protein |
VSAL_II0301 | −1.25 | 0.56460157 | 1.778 | 0.44063722 | sypL | O-antigen polymerase |
VSAL_II0302 | 1.12 | 0.85566635 | 2.713 | 0.04069669 | sypK | putative polysaccharide biosynthesis protein |
VSAL_II0303 | 1.10 | 0.87199934 | 2.928 | 0.00991193 | sypJ | putative glycosyl transferase |
VSAL_II0304 | 1.23 | 0.60244622 | 2.868 | 0.00187435 | sypI | putative glycosyl transferase |
VSAL_II0305 | −1.23 | 0.602336 | 1.035 | 0.96181635 | sypH | putative glycosyl transferase |
VSAL_II0306 | −1.35 | 0.2022748 | −1.647 | 0.06439411 | sypG | two-component response regulator, transcriptional regulatory protein LuxO |
VSAL_II0307 | −1.17 | 0.69188251 | −1.157 | 0.76925525 | sypF | response regulator, histidine kinase |
VSAL_II0308 | 1.25 | 0.4506543 | 1.021 | 0.97005546 | sypE | putative response regulator |
VSAL_II0309 | 1.20 | 0.73767376 | 2.189 | 0.08945561 | sypD | putative capsular polysaccharide synthesis protein |
VSAL_II0310 | 1.49 | 0.08145483 | 3.811 | 0.00016578 | sypC | polysaccharide biosynthesis/export protein |
VSAL_II0311 | 2.03 | 0.00119744 | 4.377 | 0.00012723 | sypB | outer membrane protein, OmpA family |
VSAL_II0312 | 1.94 | 0.01339391 | 6.063 | 5.41E-06 | sypA | hypothetical protein, putative anti-sigma factor antagonist |