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Table 4 DEGs of syp locus at low and high cell densities in the ΔrpoQ/wt

From: Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida

VSAL_ID LCD HCD Gene Function
  FC p-adjusted FC p-adjusted   
VSAL_II0295 1.22 0.74710921 2.189 0.07468146 sypR sugar transferase
VSAL_II0296 1.07 0.89636775 2.585 0.00426114 sypQ putative transmembrane glycosyl transferase
VSAL_II0297 1.10 0.84634234 3.182 0.0001044 sypP putative glycosyl transferase
VSAL_II0298 −1.05 0.91873517 2.462 0.04236082 sypO putative membrane protein
VSAL_II0299 1.14 0.81791828 2.189 0.11185209 sypN putative glycosyl transferases
VSAL_II0300 1.43 0.17621734 3.160 0.00642603 sypM hypothetical protein
VSAL_II0301 −1.25 0.56460157 1.778 0.44063722 sypL O-antigen polymerase
VSAL_II0302 1.12 0.85566635 2.713 0.04069669 sypK putative polysaccharide biosynthesis protein
VSAL_II0303 1.10 0.87199934 2.928 0.00991193 sypJ putative glycosyl transferase
VSAL_II0304 1.23 0.60244622 2.868 0.00187435 sypI putative glycosyl transferase
VSAL_II0305 −1.23 0.602336 1.035 0.96181635 sypH putative glycosyl transferase
VSAL_II0306 −1.35 0.2022748 −1.647 0.06439411 sypG two-component response regulator, transcriptional regulatory protein LuxO
VSAL_II0307 −1.17 0.69188251 −1.157 0.76925525 sypF response regulator, histidine kinase
VSAL_II0308 1.25 0.4506543 1.021 0.97005546 sypE putative response regulator
VSAL_II0309 1.20 0.73767376 2.189 0.08945561 sypD putative capsular polysaccharide synthesis protein
VSAL_II0310 1.49 0.08145483 3.811 0.00016578 sypC polysaccharide biosynthesis/export protein
VSAL_II0311 2.03 0.00119744 4.377 0.00012723 sypB outer membrane protein, OmpA family
VSAL_II0312 1.94 0.01339391 6.063 5.41E-06 sypA hypothetical protein, putative anti-sigma factor antagonist
  1. Values indicated in bold are differentially expressed genes with fold change values (FC) that are ≥2 and ≤ −2, p-value ≤0.05