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Table 3 Epistatic interactions identified for cleistogamous flower and shriveled seeds across pigeonpea genome

From: An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea

Trait

CcLG

Total interactions

aCcLGs in interaction

PVE range

Cleistogamous flower

CcLG01

5

3, 4, 7, 8, 11

1.2–5.9

 

CcLG02

9

3, 4, 5, 6, 7, 8, 10, 11

1.2–5.9

 

CcLG03

16

4, 5, 6, 7, 8, 9, 10, 11

1.2–5.9

 

CcLG04

7

5, 6, 7, 8, 9, 11

1.2–3.7

 

CcLG05

7

6, 7, 8, 9, 10, 11

1.2–1.8

 

CcLG06

5

7, 8, 9, 10, 11

1.2–3.7

 

CcLG07

4

8, 9, 10, 11

1.2

 

CcLG08

4

9, 10, 11

1.2–2.5

 

CcLG09

1

11

1.2

 

CcLG10

1

11

1.2

Shriveled seed

CcLG03

3

6, 8, 11

6.0–8.5

 

CcLG06

2

8, 11

8.5

  1. aCcLGs in bold show a PVE % of ≥5