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Table 1 Draft genome statistics of 50 Australian Xanthomonas strains and reported genome statistics of public assemblies from Genbank

From: Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli

Strain Genbank ID b Species c Host Region Collection date Contig number Mb CDS f N50 GC% Reference
BRIPa 62410 QFAP01 xa Tomato Stanthorpe 2015 36 4.9 4077 224,446 65.76 this study
BRIP 62412 QFAO01 xa Tomato Stanthorpe 2015 53 5.12 4295 403,341 65.65 this study
BRIP 62414 QFAN01 xa Tomato Stanthorpe 2015 45 5.14 4304 307,902 65.63 this study
BRIP 62416 QFAM01 xa Tomato Stanthorpe 2015 63 5.17 4266 455,337 65.66 this study
BRIP 62432 QFAQ01 xa Tomato Tenterfield 2015 49 4.95 4060 227,845 65.61 this study
NCPPB 1630 JPHE01 xa pv ce d Banana New Zealand 1960 121 4.98 4062 80,994 65.5 Harrison et al. 2014 (Unpublished)
NCPPB 1832 JPHC01 xa pv ce Banana New Zealand 1960 75 4.91 4044 172,772 65.6 Harrison et al. 2016
NCPPB 1447 AJTL01 xa pv j d na e na na 371 5.02 4257 26,883 65.4 Noh et al. (Unpublished)
NCCB 100457 APMC02 xa pv co d Hazel USA 2010 281 5.23 4346 35,479 65.5 Ibarra Caballero et al. 2013
xa3004 AZQY01 xa Barley Russia 1998 132 4.76 3936 61,665 66 Ignatov et al. 2015
IVIA 2626.1 LJGN01 xa pv p d Plum (Prunus salicina) Spain 2009 214 5.03 4268 47,650 65.4 Garita-Cambronero et al. 2016
CITA 44 LJGM01 xa Cherry (Prunus mahaleb) Spain 2002 71 4.76 3951 120,981 65.8 Garita-Cambronero et al. 2016
J303 LSGZ01 xa pv j Walnut Chile 2011 161 5.07 4227 53,673 65.5 Santander et al. (Unpublished)
CITA 124 LXKK01 xa Peach (Prunus persica) Spain 2012 128 4.75 4041 60,818 65.8 Garita-Cambronero et al. (Unpublished)
CITA 14 LXIB01 xa Peach (Prunus persica) Spain 2008 72 4.86 4001 100,946 65.6 Garita-Cambronero et al. (Unpublished)
CFBP 2528 JZEF01 xa pv j Walnut New Zealand 1956 19 5.08 4264 431,859 65.5 Cesbron et al. (Unpublished)
CFBP 7634 JZEH01 xa Walnut France 2002 5 4.93 4102 3,063,886 65.6 Cesbron et al. (Unpublished)
CFBP 7179 JZEG01 xa pv j Walnut France 2002 23 5.16 4358 479,113 65.4 Cesbron et al. (Unpublished)
CFBP 7651 JZEI01 xa Walnut France 2008 8 5.03 4188 2,811,770 65.5 Cesbron et al. (Unpublished)
CFBP 3894 LOMI01 xa pv p Plum (Prunus salicina) New Zealand 1953 78 5.06 4204 162,135 65.4 Lopez-Soriano et al. (Unpublished)
MAFF301420 BAVC01 xa pv p na na na 396 5.002 4485 21,373 65.3 Fujikawa et al. (Unpublished)
MAFF311562 BAVB01 xa pv p na na na 432 5.08 4630 23,374 65.3 Fujikawa et al. (Unpublished)
MAFF301427 BAVD01 xa pv p na na na 356 4.9 4444 27,529 65.4 Fujikawa et al. (Unpublished)
Xap33 JHUQ01 xa pv p Almond Spain 2009 474 5.1 4388 34,438 65.4 Garita-Cambronero et al. 2014
BRIP 63464 QEZX01 xe Capsicum Bundaberg 2015 140 5.34 4561 194,822 64.53 this study
DAR 82542 QEYY01 xe Capsicum Bundaberg 1981 426 5.12 4482 30,590 64.66 this study
BRIP 62441 QFAC01 xe Chilli Bundaberg 2015 135 5.34 4565 159,122 64.52 this study
BRIP 62555 QFAB01 xe Chilli Bundaberg 2015 139 5.34 4570 164,574 64.53 this study
BRIP 62757 QFAA01 xe Chilli Bundaberg 2015 149 5.33 4558 167,015 64.53 this study
BRIP 62858 QEZZ01 xe Chilli Bundaberg 2015 144 5.34 4554 146,014 64.53 this study
BRIP 62959 QEZY01 xe Chilli Bundaberg 2015 129 5.34 4560 169,175 64.53 this study
BRIP 38997 QEZV01 xe Chilli Bundaberg 1986 112 5.3 4513 163,565 64.55 this study
BRIP 39016 QEZW01 xe Apple of Peru (Nicandra physalodes) Christmas creek 1973 96 5.06 4290 171,827 64.6 this study
DAR 34895 QEYX01 xe Capsicum Dural 1981 69 5.23 4455 176,952 64.62 this study
BRIP 62390 QFAL01 xe Capsicum Gatton 2014 137 5.34 4550 153,551 64.53 this study
BRIP 62391 QFAK01 xe Capsicum Gatton 2014 131 5.34 4559 113,982 64.53 this study
BRIP 62392 QFAJ01 xe Capsicum Gatton 2014 183 5.34 4562 169,141 64.53 this study
BRIP 62395 QFAI01 xe Capsicum Gatton 2014 169 5.35 4574 179,351 64.53 this study
BRIP 62396 QFAH01 xe Chilli Gatton 2014 161 5.38 4604 102,920 64.5 this study
BRIP 62400 QFAG01 xe Chilli Gatton 2014 133 5.34 4548 194,822 64.53 this study
BRIP 62403 QFAF01 xe Chilli Gatton 2014 144 5.34 4557 135,453 64.53 this study
BRIP 62438 QFAD01 xe Capsicum Hawkesbury Heights 2015 99 5.12 4310 161,933 64.71 this study
BRIP 62425 QFAE01 xe Capsicum Stanthorpe 2015 163 5.34 4576 164,091 64.53 this study
DAR 26930 QEYW01 xe Tomato Liverpool 1976 101 5.05 4201 103,617 64.9 this study
66b JSZG01 xe Capsicum (C. annuum cv. Kambi) Bulgaria 2012 384 5.31 4550 28,793 64.6 Vancheva et al. 2015
83 M JSZH01 xe Capsicum (C. annuum cv. Kurtovska kapija) Macedonia 2013 317 5.1 4330 31,385 64.7 Vancheva et al. 2015
LMG 27970 JPYC01 xe pepper Belgium 1947 1491 5.04 4380 9186 64.7 Constantin et al. 2015
Xe329 JZLQ01 xe Pepper USA 1997 203 5.09 4242 210,541 64.7 Schwartz et al. 2015
Xe206 JZLN01 xe Pepper USA 1995 133 5.44 4648 133,864 64.5 Schwartz et al. 2015
Xe515 JZLV01 xe Pepper USA 1999 118 5.32 4525 163,350 64.5 Schwartz et al. 2015
Xe526 JZLW01 xe Pepper USA 2000 178 5.39 4598 176,627 64.5 Schwartz et al. 2015
Xe586 JZLX01 xe Pepper USA 2003 120 5.31 4522 140,453 64.6 Schwartz et al. 2015
Xe679 JZLZ01 xe Pepper USA 2008 109 5.14 4324 144,310 64.7 Schwartz et al. 2015
Xe681 JZMA01 xe Pepper USA 2009 104 5.16 4360 210,555 64.7 Schwartz et al. 2015
Xe678 JZLY01 xe Pepper USA 2008 202 5.42 4643 132,312 64.4 Schwartz et al. 2015
Xe259 JZLO01 xe Pepper USA 1995 139 5.25 4423 187,535 64.6 Schwartz et al. 2015
Xe199 JZLM01 xe Pepper USA 1994 110 5.27 4470 174,842 64.6 Schwartz et al. 2015
Xe315 JZLP01 xe Pepper USA 1996 629 5.51 4638 164,442 64.3 Schwartz et al. 2015
Xe354 JZLR01 xe Pepper USA 1998 287 5.43 4629 176,627 64.4 Schwartz et al. 2015
Xe376 JZLS01 xe Pepper USA 1995 128 5.3 4500 176,635 64.5 Schwartz et al. 2015
Xe455 JZLT01 xe Pepper USA 1998 137 5.33 4549 148,783 64.5 Schwartz et al. 2015
Xe490 JZLU01 xe Pepper USA 1999 132 5.37 4587 187,439 64.5 Schwartz et al. 2015
Xe683 JZRP01 xe Pepper USA 2010 108 5.32 4544 163,371 64.5 Schwartz et al. (Unpublished)
Xe684 JZRQ01 xe Pepper USA 2010 157 5.38 4594 148,783 64.5 Schwartz et al. (Unpublished)
Xe685 JZRR01 xe Pepper USA 2010 131 5.32 4536 148,770 64.5 Schwartz et al. (Unpublished)
F4–2 JZRU01 xe Pepper USA 2004 123 5.35 4591 159,113 64.5 Schwartz et al. (Unpublished)
H3–2 JZRW01 xe Pepper USA 2004 108 5.32 4531 163,306 64.5 Schwartz et al. (Unpublished)
Xe689 JZRS01 xe Pepper USA 2011 143 5.37 4588 163,336 64.5 Schwartz et al. (Unpublished)
Xe695 JZRT01 xe Pepper USA 2012 110 5.36 4588 163,310 64.5 Schwartz et al. (Unpublished)
G4–1 JZRV01 xe Pepper USA 2004 112 5.35 4586 163,306 64.5 Schwartz et al. (Unpublished)
L3–2 JZRX01 xe Pepper USA 2004 152 5.36 4584 159,114 64.5 Schwartz et al. (Unpublished)
Xe181 JZRY01 xe Pepper USA 1994 107 5.31 4518 163,975 64.5 Schwartz et al. (Unpublished)
ATCC 19865 AEQX01 xg Tomato Yugoslavia 1961 552 5.53 4786 22,686 63.7 Potnis et al. 2011
SM406–11 JZJW01 xg Tomato USA 2011 461 5.26 4508 18,995 63.5 Schwartz et al. 2015
SM234–10 JZJV01 xg Tomato USA 2010 250 5.33 4521 42,583 63.5 Schwartz et al. 2015
SM413–11 JZJX01 xg Tomato USA 2011 313 5.31 4527 29,049 63.5 Schwartz et al. 2015
SM605–11 JZJY01 xg Tomato USA 2011 242 5.34 4517 45,830 63.5 Schwartz et al. 2015
SM194–10 JZJR01 xg Tomato USA 2010 309 5.39 4550 41,678 63.5 Schwartz et al. 2015
SM177–10 JZJS01 xg Tomato USA 2010 245 5.31 4509 41,491 63.5 Schwartz et al. 2015
SM182–10 JZJT01 xg Tomato USA 2010 251 5.3 4505 36,743 63.5 Schwartz et al. 2015
SM220–10 JZJU01 xg Tomato USA 2010 260 5.29 4506 38,544 63.5 Schwartz et al. 2015
SM795–12 JZKA01 xg Tomato USA 2012 293 5.13 4325 37,712 63.6 Schwartz et al. 2015
SM775–12 JZJZ01 xg Tomato USA 2012 241 5.24 4420 45,190 63.6 Schwartz et al. 2015
BRIP 62383 QEZU01 xp Tomato Bowen 2012 61 5.27 4462 302,799 64.68 this study
BRIP 62384 QEZT01 xp Tomato Bowen 2012 77 5.25 4450 312,509 64.66 this study
BRIP 62398 QEZP01 xp Tomato Bowen 2014 57 5.23 4410 187,438 64.67 this study
BRIP 62404 QEZO01 xp Tomato Bowen 2014 109 5.25 4446 140,260 64.66 this study
BRIP 62397 QEZQ01 xp Tomato Brisbane 2014 45 4.97 4178 288,612 64.99 this study
BRIP 62386 QEZS01 xp Tomato Bundaberg 2012 80 5.29 4484 187,311 64.67 this study
BRIP 62405 QEZN01 xp Tomato Bundaberg 2014 77 5.28 4478 293,980 64.67 this study
BRIP 63262 QEZM01 xp Tomato Bundaberg 2015 100 5.33 4545 372,915 64.65 this study
BRIP 63565 QEZL01 xp Tomato Bundaberg 2015 73 5.23 4421 312,487 64.68 this study
BRIP 63666 QEZK01 xp Tomato Bundaberg 2015 59 5.28 4473 312,512 64.68 this study
BRIP 62389 QEZR01 xp Tomato South Turramurra 2013 70 5.27 4466 225,394 64.68 this study
Xp91–118 CP019725.1 xp Tomato USA 2004 1 4.89 4450 4,898,349 65 Potnis et al. 2011
Xp5–6 JZVA01 xp Tomato USA 2006 70 5.3 4501 202,262 64.6 Schwartz et al. 2015
Xp7–12 JZVB01 xp Tomato USA 2006 65 5.12 4343 207,802 64.9 Schwartz et al. 2015
Xp9–5 JZVD01 xp Tomato USA 2006 113 5.38 4624 193,597 64.6 Schwartz et al. 2015
Xp10–13 JZVE01 xp Tomato USA 2006 78 5.17 4410 158,830 64.8 Schwartz et al. 2015
Xp11–2 JZVF01 xp Tomato USA 2006 50 5.35 4568 302,422 64.6 Schwartz et al. 2015
Xp15–11 JZVG01 xp Tomato USA 2006 63 5.31 4520 236,137 64.6 Schwartz et al. 2015
GEV839 JZVK01 xp Tomato USA 2012 109 5.44 4669 107,802 64.4 Schwartz et al. 2015
Xp3–15 JZUY01 xp Tomato USA 2006 93 5.46 4692 226,886 64.4 Schwartz et al. 2015
Xp8–16 JZVC01 xp Tomato USA 2006 62 5.26 4469 241,328 64.6 Schwartz et al. 2015
Xp4–20 JZUZ01 xp Tomato USA 2006 71 5.29 4515 250,796 64.7 Schwartz et al. 2015
Xp17–12 JZVH01 xp Tomato USA 2006 84 5.2 4387 201,083 64.7 Schwartz et al. 2015
Xp18–15 JZVI01 xp Tomato USA 2006 78 5.35 4568 178,519 64.6 Schwartz et al. 2015
GEV909 JZVO01 xp Tomato USA 2012 71 5.14 4388 128,792 64.9 Schwartz et al. 2015
GEV940 JZVS01 xp Tomato USA 2012 98 5.14 4384 118,066 64.9 Schwartz et al. 2015
GEV968 JZVT01 xp Tomato USA 2012 96 5.14 4392 114,913 64.9 Schwartz et al. 2015
GEV1001 JZVV01 xp Tomato USA 2012 78 5.18 4402 123,606 64.8 Schwartz et al. 2015
GEV872 JZVL01 xp Tomato USA 2012 80 5.14 4401 143,709 64.9 Schwartz et al. 2015
GEV893 JZVM01 xp Tomato USA 2012 116 5.13 4387 105,783 64.9 Schwartz et al. 2015
Xp4B JZUX01 xp Tomato USA 1998 214 5.22 4469 73,796 64.6 Schwartz et al. 2015
GEV904 JZVN01 xp Tomato USA 2012 134 5.14 4405 77,145 64.9 Schwartz et al. 2015
GEV936 JZVR01 xp Tomato USA 2012 104 5.14 4390 111,234 64.9 Schwartz et al. 2015
GEV915 JZVP01 xp Tomato USA 2012 70 5.12 4356 180,795 64.9 Schwartz et al. 2015
GEV917 JZVQ01 xp Tomato USA 2012 122 5.14 4390 85,814 64.9 Schwartz et al. 2015
GEV1054 JZVY01 xp Tomato USA 2012 85 5.23 4450 128,850 64.7 Schwartz et al. 2015
GEV1044 JZVX01 xp Tomato USA 2012 82 5.24 4456 128,850 64.7 Schwartz et al. 2015
TB6 JZWA01 xp Tomato USA 2013 148 5.27 4473 249,903 64.6 Schwartz et al. 2015
TB9 JZWB01 xp Tomato USA 2013 268 5.32 4483 236,007 64.6 Schwartz et al. 2015
GEV993 JZVU01 xp Tomato USA 2012 69 5.15 4385 176,938 64.9 Schwartz et al. 2015
GEV1026 JZVW01 xp Tomato USA 2012 70 5.15 4373 158,062 64.9 Schwartz et al. 2015
GEV1063 JZVZ01 xp Tomato USA 2012 93 5.16 4384 128,850 64.8 Schwartz et al. 2015
TB15 JZWC01 xp Tomato USA 2013 261 5.33 4505 233,353 64.6 Schwartz et al. 2015
Xp2010 JZVJ01 xp Tomato USA 2010 13 5.25 4575 1,113,511 64.6 Schwartz et al. 2015
4P1S2 JRWW01 xp Tomato Sicily 2011 442 5.51 5216 41,480 64.7 Torelli et al. (Unpublished)
DAR 33341 QEYV01 x sp Capsicum Peats Ridge 1979 57 5.18 4387 199,700 64.66 this study
BRIP 62409 QEZJ01 x sp Tomato Stanthorpe 2015 37 4.92 4033 210,840 65.92 this study
BRIP 62411 QEZI01 x sp Tomato Stanthorpe 2015 46 4.81 4002 334,519 66.14 this study
BRIP 62415 QEZH01 x sp Tomato Stanthorpe 2015 49 4.85 3983 325,857 66.06 this study
BRIP 62418 QEZG01 x sp Tomato Stanthorpe 2015 67 5.09 4274 193,024 65.8 this study
BRIP 38864 QEZA01 xv Wild tomato Bowen 1982 69 5.22 4439 377,679 64.23 this study
DAR 26931 QEYU01 xv Capsicum Burrundulla 1977 46 5.18 4386 243,089 64.25 this study
DAR 26933 QEYT01 xv Capsicum Redland bay 1977 1851 4.93 4899 4596 64.09 this study
BRIP 62388 QEZD01 xv Tomato South Turramurra 2012 85 5.31 4488 142,449 64.02 this study
BRIP 62413 QEZF01 xv Tomato Stanthorpe 2015 56 5.37 4574 377,588 64.12 this study
BRIP 62423 QEZE01 xv Tomato Stanthorpe 2015 69 5.37 4582 467,775 64.12 this study
BRIP 62428 QEZC01 xv Tomato Tenterfield 2015 66 5.36 4575 298,833 64.12 this study
BRIP 62429 QEZB01 xv Tomato Tenterfield 2015 60 5.36 4567 198,567 64.13 this study
BRIP 38861 QEYZ01 xv Tomato Victoria Point 1981 46 5.23 4442 377,697 64.22 this study
ATCC 35937 AEQV01 xv Tomato New Zealand 1955 296 5.53 4768 41,380 64.1 Potnis et al. 2011
53 M JSYJ01 xv Capsicum annuum cv. Kurtovska kapija Macedonia 2005 344 5.29 4526 29,340 64 Vancheva et al. 2015
15b JSXZ01 xv Capsicum annum Bulgaria 2005 338 5.29 4517 31,449 64 Vancheva et al. 2015
LMG 919 JTEF01 xv Tomato Zimbabwe na 420 5.12 4391 21,731 64.3 Lefeuvre et al. (Unpublished)
LMG 920 JTEG01 xv Tomato Italy 1956 326 5.16 4430 28,850 64.2 Lefeuvre et al. (Unpublished)
  1. aBrisbane pathology herbarium ID
  2. bWGS project number or Genbank ID where complete genome is available
  3. cxa X. arboricola, xe X. euvesicatoria, xp X. perforans, xv X. vesicatoria, x sp Xanthomonas sp.
  4. dxa pv ce: X. arboricola pv. celebensis, xa pv j: X. arboricola pv. juglandis, xa pv co: X. arboricola pv. corylina, xa pv p: X. arboricola pv. pruni
  5. eData not available
  6. fCDS as determined by the annotation of this study for consistency
  7. Included statistics are contig number, length in Mbp, CDS, N50 and GC content. All reported CDS numbers were generated in this study. The metadata for Australian strains was sourced from Roach et al. 2017