Skip to main content

Table 2 Significant and suggestive SNPs identified for traits in the RW chickens

From: Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Traita SNP GGAb Position (bp) Alleles MAFc p-value Candidate / nearest genes
DOCDC rs314384321 2 123,194,966 C/T 0.05 8.97e-06d SLC7A13
rs15150566 2 122,907,241 A/G 0.05 9.57e-06d RALYL
rs15151359 2 124,071,457 A/G 0.05 1.78e-05d MMP16
rs16116752 2 119,793,622 A/G 0.06 3.76e-05d ZFHX4
rs14243963 2 122,016,783 A/G 0.07 4.26e-05d IMPA1
rs16455118 4 91,252,525 C/A 0.39 5.13e-06d DYSF
rs317256404 7 12,113,970 A/G 0.46 1.01e-05d PLEKHM3
rs16209462 28 556,300 A/G 0.01 2.20e-05d SPPL2B
YEF rs13730111 2 121,679,302 C/T 0.20 1.24e-06e ZNF704
rs316856766 2 123,425,663 A/G 0.18 1.41e-05d CA2
rs15630281 12 1,302,350 C/T 0.33 2.08e-05d PRKCD
rs315166929 12 1,006,316 C/T 0.46 2.14e-05d LOC107054345
AFE rs317931060 1 178,102,549 A/C 0.34 1.52e-05d FGF9
BW rs15619223 4 76,404,421 A/C 0.42 2.90e-05d LCORL
EW rs14201361 2 68,512,817 A/G 0.19 3.10e-05d KIAA1468
rs14200974 2 68,304,144 A/G 0.26 3.21e-05d PHLPP1
rs14439117 4 24,250,433 C/T 0.22 5.42e-05d TLL1
  1. aTraits studied: DOCDC day-old chick down colour, YEF yield of extraembryonic fluid, AFE age at first egg, BW body weight, EW egg weight
  2. bChicken chromosome
  3. cMinor allele frequency
  4. dSuggestive SNPs
  5. eSignificant SNP