Genome-wide association studies targeting the yield of extraembryonic fluid and production traits in Russian White chickens

Table 2 Significant and suggestive SNPs identified for traits in the RW chickens

Trait^a	SNP	GGA^b	Position (bp)	Alleles	MAF^c	p-value	Candidate / nearest genes
DOCDC	rs314384321	2	123,194,966	C/T	0.05	8.97e-06^d	SLC7A13
	rs15150566	2	122,907,241	A/G	0.05	9.57e-06^d	RALYL
	rs15151359	2	124,071,457	A/G	0.05	1.78e-05^d	MMP16
	rs16116752	2	119,793,622	A/G	0.06	3.76e-05^d	ZFHX4
	rs14243963	2	122,016,783	A/G	0.07	4.26e-05^d	IMPA1
	rs16455118	4	91,252,525	C/A	0.39	5.13e-06^d	DYSF
	rs317256404	7	12,113,970	A/G	0.46	1.01e-05^d	PLEKHM3
	rs16209462	28	556,300	A/G	0.01	2.20e-05^d	SPPL2B
YEF	rs13730111	2	121,679,302	C/T	0.20	1.24e-06^e	ZNF704
	rs316856766	2	123,425,663	A/G	0.18	1.41e-05^d	CA2
	rs15630281	12	1,302,350	C/T	0.33	2.08e-05^d	PRKCD
	rs315166929	12	1,006,316	C/T	0.46	2.14e-05^d	LOC107054345
AFE	rs317931060	1	178,102,549	A/C	0.34	1.52e-05^d	FGF9
BW	rs15619223	4	76,404,421	A/C	0.42	2.90e-05^d	LCORL
EW	rs14201361	2	68,512,817	A/G	0.19	3.10e-05^d	KIAA1468
	rs14200974	2	68,304,144	A/G	0.26	3.21e-05^d	PHLPP1
	rs14439117	4	24,250,433	C/T	0.22	5.42e-05^d	TLL1

^aTraits studied: DOCDC day-old chick down colour, YEF yield of extraembryonic fluid, AFE age at first egg, BW body weight, EW egg weight
^bChicken chromosome
^cMinor allele frequency
^dSuggestive SNPs
^eSignificant SNP

ISSN: 1471-2164