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Table 3 The 14 stable loci for leaf type traits in two populations across different environments

From: QTL fine-mapping of soybean (Glycine max L.) leaf type associated traits in two RILs populations

RILs namea

Loci nameb

QTL namec

Chrd

Bin name

CIv1.1 (bp)e

Position (cM)

LODf

ADDg

R2 (%)h

CIv2.0 (bp)i

ZH

Z-loci-31

qLL11c-2

11

Bin107

36,478,191–36,619,869

85.70

2.89

−0.33

7.10

32,011,930–32,147,322

qLL11d

11

Bin107

36,478,191–36,619,869

85.70

2.99

−0.30

6.77

32,011,930–32,147,322

Z-loci-36

qLA14a

14

Bin23

4,871,116–4,920,206

29.80

2.71

−1.18

6.06

4,954,181–5,005,224

qLA14c

14

Bin23

4,871,116–4,920,206

29.80

2.64

−1.48

6.42

4,954,181–5,005,224

Z-loci-37

qLW14a

14

Bin25

5,292,323–5,333,084

30.90

4.40

−0.15

10.44

5,403,689–5,448,621

qLW14c-1

14

Bin25

5,292,323–5,333,084

30.90

4.52

−0.19

10.86

5,403,689–5,448,621

GB

G-loci-10

qPL3g-1

3

Bin35

4,763,728–5,164,283

34.90

3.65

0.56

5.19

4,566,741–5,065,688

qPL3i-2

3

Bin35

4,763,728–5,164,283

34.90

2.87

0.75

4.28

4,566,741–5,065,688

G-loci-15

qLS3h

3

Bin142

41,133,188–41,201,407

102.80

3.30

0.05

3.61

39,126,123–39,181,924

qLS3i

3

Bin142

41,133,188–41,201,407

102.80

2.56

0.06

2.71

39,126,123–39,181,924

G-loci-18

qLL4e-1

4

Bin16

4,020,745–4,048,162

21.60

5.11

−0.26

7.51

4,070,205–4,094,078

qLL4g-1

4

Bin16

4,020,745–4,048,162

21.60

13.82

−0.47

18.12

4,070,205–4,094,078

qLL4i

4

Bin16

4,020,745–4,048,162

21.60

11.13

−0.44

15.84

4,070,205–4,094,078

G-loci-23

qPL4f

4

Bin27

4,764,737–4,814,980

25.70

2.77

−0.42

4.01

4,822,857–4,873,263

qPL4g

4

Bin27

4,764,737–4,814,980

25.70

4.63

−0.63

6.47

4,822,857–4,873,263

G-loci-56

qLS12g

12

Bin126

36,772,134–36,809,388

122.10

2.63

−0.05

3.00

36,730,431–36,766,381

qLS12h

12

Bin126

36,772,134–36,809,388

122.10

3.48

−0.05

4.06

36,730,431–36,766,381

G-loci-59

qLW13g

13

Bin187

33,303,067–33,385,748

142.20

2.60

0.13

3.32

34,514,243–34,601,384

qLW13h

13

Bin187

33,303,067–33,385,748

142.20

2.84

0.11

3.47

34,514,243–34,601,384

G-loci-63

qLS14e

14

Bin6

495,526–538,526

4.50

11.01

0.04

13.67

506,220–544,002

qLS14f

14

Bin6

495,526–538,526

4.50

2.89

0.02

3.95

506,220–544,002

qLS14h

14

Bin6

495,526–538,526

4.50

2.78

0.05

3.06

506,220–544,002

G-loci-65

qLW14h

14

Bin9

664,663–746,688

6.70

4.73

−0.09

7.08

659,428–753,278

qLW14i-1

14

Bin9

664,663–746,688

6.70

3.85

−0.20

4.91

659,428–753,278

G-loci-77

qLS16e

16

Bin179

35,798,290–35,892,430

122.30

12.01

0.05

15.30

36,302,667–36,395,478

qLS16i

16

Bin179

35,798,290–35,892,430

122.30

2.67

0.06

2.83

36,302,667–36,395,478

G-loci-93

qLA19g

19

Bin136

45,183,988–45,457,039

110.70

3.16

−1.52

4.24

45,304,487–45,567,452

qLA19h-2

19

Bin136

45,183,988–45,457,039

110.70

4.69

−1.37

6.67

45,304,487–45,567,452

qLA19i

19

Bin136

45,183,988–45,457,039

110.70

2.65

−1.79

3.89

45,304,487–45,567,452

qLW19g

19

Bin136

45,183,988–45,457,039

110.70

12.83

−0.30

18.31

45,304,487–45,567,452

qLW19h-2

19

Bin136

45,183,988–45,457,039

110.70

9.64

−0.21

12.76

45,304,487–45,567,452

G-loci-94

qLS19g-2

19

Bin144

46,060,014–46,274,131

115.90

9.44

0.10

13.77

46,167,548–46,388,153

qLS19i-2

19

Bin144

46,060,014–46,274,131

115.90

8.19

0.11

11.03

46,167,548–46,388,153

  1. aRIL name: ZH Zhonghuang 24 × Huaxia 3 RIL population; GB Guizao 1 × Brazil 13 RIL population
  2. bLoci name is composited with the first letter of RIL population name known as ‘Z’ or ‘G’ and ‘loci’ following its former order
  3. cThe name of QTL is a composite of the leaf traits: leaf area (LA); leaf length (LL); leaf width (LW); petiole length (PL); leaf shape (LS); a: the V6 growth stage in the summer of 2017 at Zengcheng; c: the R4 growth stage in the summer of 2017 at Zengcheng;d: the R6 growth stage in the summer of 2017 at Zengcheng; e: the V6 growth stage in the summer of 2017 at Zengcheng; f: the R2 growth stage in the spring of 2017 at Zengcheng; g: the R4 growth stage in the summer of 2016 at Zengcheng; h: the R6 growth stage in the summer of 2017 at Zengcheng; i: the R6 growth stage in the summer of 2017 at the Guangzhou experimental station
  4. dChr refers to chromosome
  5. eThe physical position corresponding to the 95% confidence interval for the detected QTL based on Glyma.Wm82. a1. v1.1 gene model
  6. fLOD indicates the logarithm of odds score
  7. gPositive and negative values indicated additive effect by the alleles of parents, respectively
  8. hR2 indicates the phenotypic variance explained by individual QTL
  9. iThe most proximal Glyma.Wm82.a2.v1 gene model physical intervals of the detected QTLs were transformed by focusing on the positions of the interval nearest 3′ and 5′ ending genes