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Table 1 Summary of sequencing and assembly of the transcriptome from L. vannamei

From: Transcriptome analysis reveals the activation of neuroendocrine-immune system in shrimp hemocytes at the early stage of WSSV infection

  Raw Reads Clean Reads Percentage retained Gene number Ratio
PHc-1 47,181,514 45,798,586 97.07% 25,525 56.98%
PHc-2 41,051,168 39,912,832 97.23% 24,555 54.82%
PHc-3 49,325,926 47,856,124 97.02% 31,895 71.21%
PHc 137,558,608 133,567,542 97.10% 35,596 79.47%
WHc-1 59,987,346 58,029,050 96.74% 37,885 84.58%
WHc-2 56,726,760 55,039,876 97.03% 33,889 75.66%
WHc-3 49,738,732 48,241,248 96.99% 33,763 75.38%
WHc 166,452,838 161,310,174 96.91% 42,851 95.66%
  1. Note: Ratio = gene number expressed in each sample/all reference gene number (44,793)