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Fig. 2 | BMC Genomics

Fig. 2

From: ALFA: annotation landscape for aligned reads

Fig. 2

ALFA category plots (raw and normalized) for Bisulfite Sequencing (BS-Seq) data on Arabidopsis thaliana samples (public data available on NCBI: SRA035939 and EBI: ERA051872). Datasets were gathered from two studies performed on the same model but in two different laboratories: Lab1-Rep1 (SRR342381) and Lab1-Rep2 (SRR342391) from [14] and Lab2-Rep1 (ERR046552) and Lab2-Rep2 (ERR046553) from [15]. ALFA highlights laboratory dependent differences between reads falling in CDS (t-test significant at a 5% level with a p-value of 4 × 10–2).

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