Fig. 7

ALFA biotype plots (raw and normalized) for RNA sequencing (RNA-Seq) data from a Saccharomyces cerevisiae sample (public data available on NCBI: SRA030505 - SRR927165). In this example, a customized GTF annotation file was created to highlight the flexibility of ALFA. Dedicated biotypes characterizing various Saccharomyces cerevisiae stable transcripts (SUTs [24]) and unstable transcripts (CUTs [21], NUTs [22], XUTS [23]) were converted from a BED file.