Table 3 SSRs identified in 10 Salicaceae species
SSR type | S. purpurea | S. suchowensis | S. sachalinensis | S. dasyclados | S. viminalis | S. eriocephala | S. matsudana | S. babylonica | S. fargesii | P. trichocarpa |
|---|---|---|---|---|---|---|---|---|---|---|
AC/GT | 30 | 18 | 19 | 12 | 36 | 29 | 30 | 3 | 29 | 40 |
AG/CT | 228 | 196 | 197 | 196 | 184 | 240 | 289 | 59 | 206 | 171 |
AT/AT | 20 | 21 | 8 | 14 | 9 | 13 | 19 | 20 | 13 | 37 |
CG/CG | 0 | 1 | 0 | 0 | 1 | 0 | 4 | 2 | 3 | 1 |
Di-nucleotide | 278 | 236 | 224 | 222 | 230 | 282 | 342 | 84 | 251 | 249 |
AAC/GTT | 75 | 58 | 92 | 74 | 64 | 119 | 75 | 2 | 80 | 122 |
AAG/CTT | 403 | 323 | 221 | 274 | 238 | 275 | 430 | 23 | 252 | 377 |
AAT/ATT | 45 | 21 | 17 | 19 | 28 | 33 | 43 | 8 | 32 | 44 |
ACC/GGT | 506 | 377 | 319 | 267 | 255 | 327 | 469 | 21 | 353 | 409 |
ACG/CGT | 88 | 77 | 65 | 90 | 61 | 88 | 164 | 9 | 60 | 69 |
ACT/AGT | 17 | 10 | 4 | 7 | 11 | 8 | 9 | 1 | 7 | 16 |
AGC/CTG | 495 | 360 | 224 | 236 | 318 | 291 | 605 | 13 | 362 | 405 |
AGG/CCT | 545 | 378 | 328 | 330 | 294 | 384 | 463 | 21 | 345 | 390 |
ATC/ATG | 208 | 150 | 153 | 162 | 154 | 197 | 292 | 9 | 141 | 296 |
CCG/CGG | 113 | 70 | 46 | 47 | 64 | 44 | 116 | 6 | 89 | 76 |
Tri-nucleotide | 2495 | 1824 | 1451 | 1515 | 1487 | 1739 | 2710 | 113 | 1721 | 2204 |
Tetra-nucleotide | 13 | 6 | 3 | 8 | 11 | 8 | 10 | 12 | 5 | 12 |
Penta-nucleotide | 11 | 10 | 8 | 9 | 7 | 13 | 10 | 3 | 14 | 15 |
Hexa-nucleotide | 205 | 171 | 132 | 122 | 133 | 139 | 196 | 22 | 148 | 210 |
Total number | 3002 | 2247 | 1818 | 1876 | 1868 | 2181 | 3268 | 234 | 2139 | 2690 |