Fig. 8
From: RMalign: an RNA structural alignment tool based on a novel scoring function RMscore
An example of target modeled by PRIME 2.0 but PRIME fails in this case. The target, 1t4o chain A and 1t4l chain A, is modeled on the template 4oog, chain C and D. The target/template structural similarity for protein is 0.462 (TM-score) and RNA is 0.600 (RMscore). The ligand RMSD for the model (PRIME 2.0) is 6.81 Å and for the model (PRIME 1.0) is 12.57 Å. The case shows that more templates can be detected by RMalign than SARA