Skip to main content

Table 1 In silico serotyping and MLST results of the isolates included

From: Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

Country ST Complex ST Serotype Source
Netherlands (145) ST-122 (69) 583 (69) O63:H6 (42) Human (41), Leafy greens (1)
O125:H6 (22) Human (22)
ONT:H6 (5) Human (5)
ST-20 (15) 20 (15) O45:H2 (7) Pigeon (6), Human (1)
O128:H2 (5) Human (4), Livestock (1)
O4:H2 (1) Pigeon (1)
O4:H− (1) Pigeon (1)
ONT:H2 (1) Pigeon (1)
ST-28 (30) 121 (27) O113:H6 (25) Human (25)
ONT:H6 (2) Human (2)
28 (3) O96:H7 (2) Human (2)
O81:H6 (1) Human (1)
ST-582 (7) 582 (7) O132:H34 (7) Human (6), Pigeon (1)
None (7) 6044 (7) O63:H6 (7) Human (7)
None (5) 722 (5) O145:H34 (5) Human (5)
None (2) 2681 (2) ONT:H− (2) Pigeon (2)
ST131 (1) 131 (1) O16:H5 (1) Human (1)
None (9) 517 (1) O35:H19 (1) Human (1)
676 (1) O16:H5 (1) Human (1)
929 (1) O166:H14 (1) Human (1)
1324 (1) ONT:H32 (1) Leafy greens (1)
6045 (1) O63:H6 (1) Human (1)
New_1 (1) O63:H6 (1) Human (1)
New_2 (1) O115:H52 (1) Human (1)
New_3 (1) O184:H30 (1) Pigeon (1)
New_5 (1) ONT:H− (1) Human (1)
Others (78) ST-122 (34) 583 (34) O63:H6 (28) Human (16), Unknown (12)
O125:H6 (6) Human (6)
ST-20 (21) 20 (18) O45:H2 (8) Pigeon (3), Human (2), Avian (1), Pet (1), Unknown (1)
O128:H2 (8) Animal (1), Human (1), Pigeon (1), Unknown (5)
O4:H2 (1) Human (1)
O75:H2 (1) Pigeon (1)
New_4 (2) O4:H2 (2) Pigeon (2)
2685 (1) ONT:H2 (1) Pigeon (1)
None (14) 722 (14) O145:H34 (14) Human (3), Animal (1), Unknown (10)
ST-165 (2) 301 (2) O55:H9 (1) Human (1)
O80:H2 (1) Human (1)
ST-29 (1) 21 (1) O26:H11 (1) Human (1)
None (6) 40 (1) O109:H21 (1) Human (1)
642 (1) O34:H4 (1) Human (1)
2678 (1) O137:H6 (1) Human (1)
2680 (1) O69:H52 (1) Human (1)
6675 (1) O137:H6 (1) Human (1)
New_6 (1) O63:H6 (1) Human (1)
  1. Note: The number of isolates are indicated in between parentheses. The isolates indicated in bold and underlined are E. albertii