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Table 3 Tapetum development and function-related genes

From: Comparative transcriptome analysis and ChIP-sequencing reveals stage-specific gene expression and regulation profiles associated with pollen wall formation in Brassica rapa

Classification

Brassica rapa Locus

Arabidopsis Locus

Description

Arabidopsis microarray data

WT/ems1a

WT/spl1a

WT/tdf1b

WT/amsc

WT/ms1d

Known genes

Bra002847

AT5G56110

AtMYB80

2.2

2.5

−2.2

Bra035604

AT5G56110

      

Bra002401

AT5G22260

MALE STERILITY 1

−2.7

Bra039378

AT3G13220

ABCG26

52.2

56.7

2.2

5.9

−1.6

Bra002004

AT2G16910

AMS

31.8

28.8

3.3

−2.1

Bra013041

AT2G16910

      

Bra033272

AT1G01280

CYP703

47.9

43.6

12.0

9.9

−2.9

Bra004386

AT1G69500

CYP704B1

117.5

127.8

8.6

11.6

−2.7

Bra038691

AT3G11980

MALE STERILITY 2

42.8

50.8

31.7

17.5

−2.2

Bra017147

AT1G02050

LESS ADHESIVE POLLEN 6

17.4

14.8

6.2

6.5

Bra011566

AT4G34850

LESS ADHESIVE POLLEN 5

22.4

8.7

Bra036646

AT1G62940

ACYL-COA SYNTHETASE 5

53.5

93.4

18.4

6.9

−4.0

Taptum specific genes

Bra038803

AT4G20420

tapetum specific protein TAP35/TAP44

33.9

53.2

11.7

−7.2

Bra020920

AT4G20420

      

Bra028324

AT3G42960

ATA1/TAPETUM 1

61.4

106.6

2.9

8.2

−1.6

Carbonhydrate metabolism and transport

Bra020859

AT4G22080

pectin lyase-like superfamily protein

7.5

3.4

Bra013442

AT4G20050

QRT3

34.3

37.3

5.3

6.3

−1.5

Bra023600

AT5G17200

pectin lyase-like superfamily protein

1.8

2.1

Bra001918

AT3G23770

Glycosyl hydrolases family 17 protein

28.5

25.0

4.9

4.8

Bra032758

AT4G14080

Glycosyl hydrolases family 17 protein

82.9

204.5

54.0

8.6

−3.9

Bra022636

AT5G53190

nodulin MtN3 family protein

37.2

54.3

1.2

1.1

Oxidation reduction

Bra015740

AT1G76470

NAD(P)-binding Rossmann-fold superfamily protein

18.7

18.0

11.4

13.1

22.7

Bra021337

AT3G57620

glyoxal oxidase-related protein

7.7

8.2

2.4

Bra029151

AT5G51950

glucose-methanol-choline oxidoreductase family protein

12.2

14.8

3.6

−1.6

Bra022571

AT5G51950

      

Bra028286

AT5G51950

      

The others

Bra020777

AT3G06100

NOD26-LIKE INTRINSIC PROTEIN 7

8.5

12.2

7.5

5.4

−2.1

Bra037505

AT5G48210

prolamin-like protein (DUF1278)

5.2

6.7

7.3

9.6

Bra020712

AT5G48210

      

Bra015870

AT1G75050

pathogenesis-related thaumatin superfamily protein

3.8

6.1

4.6

1.3

Bra032134

AT2G23945

eukaryotic aspartyl protease family protein

Bra011161

AT4G30030

eukaryotic aspartyl protease family protein

Bra009795

AT5G24820

eukaryotic aspartyl protease family protein

49.4

62.3

Bra030647

AT1G06280

LOB DOMAIN-CONTAINING PROTEIN 2

18.4

19.5

8.2

Bra018697

AT1G47980

desiccation-like protein

19.8

17.5

32.6

17.7

6.3

Bra018660

AT1G08065

ALPHA CARBONIC ANHYDRASE 5

26.9

24.5

4.9

-

-

Bra016531

AT1G18960

myb-like transcriptional regulator family protein

-

7.5

9.6

-

−4.2

  1. The values in the column of “WT/ms1” are expressed in terms of log2FC (fold change) and the values in other columns are expressed in terms of the ration of wild type to mutant. Shot dashes represent either no significant difference or no expression.
  2. aGenes showing expression change in spl and ems1 mutant [36]
  3. bGenes showing expression change in tdf1 mutant [15]
  4. cGenes showing expression change in ams mutant [16]
  5. dGenes showing expression change in ms1 mutant [37]