Classification | Brassica rapa | Type | Arabidopsis | |||||
---|---|---|---|---|---|---|---|---|
Locus | Fold enrichment | FDR (%) | Locus | Gene name | Description | References | ||
Meiosis process | Bra015676 | 6.35 | 2.19 | H3K4 | AT1G77320 | MEI1 | BRCT-domain-containing protein | [38] |
Bra029127 | 7.58 | 2.16 | H3K4 | AT5G52290 | SHOC1 | protein with similarity to XPF endonucleases | [39] | |
Bra017718 | 6.02 | 4.73 | H3K4 | AT4G35520 | MLH3 | DNA mismatch repair protein | [40] | |
Bra000955 | 9.92 | 1.61 | H3K4 | AT4G01370 | MAPK4 | MAP kinase | [41] | |
Bra019444 | 2.27 | 11.76 | H3K27 | AT3G43210 | TES | ATP binding microtubule motor family protein | [42] | |
Bra023796 | 9.7 | 44.54 | H3K27 | AT3G22880 | DMC1 | DNA repair (Rad51) family protein | [43] | |
Bra001890 | 7.24 | 23.26 | H3K27 | AT3G22880 | ||||
Tapetum development | Bra009277 | 10.25 | 1.91 | H3K4 | AT5G07280 | EMS1 | leucine-rich repeat receptor protein kinase | [44] |
Bra002401 | 5.8 | 11.36 | H3K27 | AT5G22260 | MS1 | PHD-finger motif transcription factor | [17] | |
Bra000615 | 4.68 | 12.43 | H3K27 | AT5G50260 | CEP1 | papain-like cysteine protease | [45] | |
Bra013041 | 6.24 | 11.48 | H3K27 | AT2G16910 | AMS | basic helix-loop helix transcription factor | [16] | |
Pollen exine formation | Bra014776 | 10.36 | 1.52 | H3K4 | AT3G55090 | ABCG16 | ABCG half-transporter | [22] |
Bra024796 | 9.47 | 1.76 | H3K4 | AT2G02970 | APY6 | putative apyrase | [46] | |
Bra017147 | 7.5 | 1.52 | H3K4 | AT1G02050 | LAP6 | chalcone and stilbene synthase family | [25] | |
Bra008832 | 15.49 | 12.07 | H3K4 | AT5G13390 | NEF1 | membrane protein | [47] | |
Bra023407 | 15.38 | 5.03 | H3K4 | AT5G13390 | ||||
Bra034054 | 6.58 | 2.42 | H3K4 | AT3G09090 | DEX1 | membrane associated protein | [48] | |
Bra029746 | 6.58 | 2.09 | H3K4 | AT3G09090 | ||||
Bra038909 | 6.69 | 2.54 | H3K4 | AT3G51610 | NPU | membrane protein | [49] | |
Bra014776 | 8.58 | 11.76 | H3K27 | AT3G55090 | ABCG16 | ABCG half-transporter | [22] | |
Bra025595 | 7.8 | 11.49 | H3K27 | AT5G40260 | RPG1 | a member of the MtN3/saliva gene family | [50] | |
Bra013442 | 4.12 | 15.6 | H3K27 | AT4G20050 | QRT3 | polygalacturonase | [51] | |
Pollen maturation | Bra029700 | 9.92 | 1.51 | H3K4 | AT3G08590 | IPGAM2 | phosphoglycerate mutase | [52] |
Bra022067 | 7.76 | 1.59 | H3K4 | AT3G01780 | TPLATE | cytokinesis protein | [53] | |
Bra037331 | 6.58 | 1.55 | H3K4 | AT4G00330 | CRCK2 | calmodulin-binding receptor-like cytoplasmtic kinase | [54] | |
Bra001510 | 5.46 | 2.32 | H3K4 | AT3G13530 | MAP3KE1 | epsilon protein kinase | [55] | |
Bra001358 | 4.9 | 3.06 | H3K4 | AT3G10405 | – | vacuolar acid trehalase | [54] | |
Bra026579 | 4.57 | 5.65 | H3K4 | AT2G02810 | UTR1 | multitransmembrane hydrophobic protein | [56] | |
Bra008037 | 5.02 | 2.43 | H3K4 | AT1G72520 | LOX4 | PLAT/LH2 domain-containing lipoxygenase family protein | [57] | |
Bra024316 | 5.02 | 3.98 | H3K4 | AT5G64630 | FAS2 | chromatin assembly factor-1 p60 subunit | [58] | |
Bra029541 | 8.88 | 1.64 | H3K4 | AT4G04970 | GSL1 | callose synthase | [59] | |
Bra008722 | 3.01 | 17.63 | H3K27 | AT5G15100 | PIN8 | auxin transporter | [60] | |
Bra008615 | 9.47 | 14.76 | H3K27 | AT5G16530 | PIN5 | an atypical member of the PIN family | [61] | |
Bra039940 | 7.91 | 11.59 | H3K27 | AT2G22950 | ACA7 | putative auto-regulated Ca2+-ATPase | [62] | |
Bra033961 | 3.57 | 15.97 | H3K27 | AT1G68090 | ANN5 | calcium-binding protein | [63] | |
Bra007536 | 6.69 | 11.27 | H3K27 | AT3G60460 | DUO1 | R2R3 MYB transcription factor | [64] | |
Bra003413 | 5.57 | 14.1 | H3K27 | AT3G60460 | ||||
Pollen maturation and anther dehiscence | Bra002816 | 11.48 | 1.82 | H3K4 | AT5G56450 | PM-ANT | mitochondrial substrate carrier family protein | [65] |
Bra004869 | 6.8 | 11.27 | H3K27 | AT2G44810 | DAD1 | alpha/beta hydrolases superfamily protein | [66] | |
Pollen development and tube growth | Bra040162 | 5.35 | 2.09 | H3K4 | AT4G17530 | RAB1C | Rab GTPase | [67] |
Bra009268 | 5.35 | 2.74 | H3K27 | AT5G07370 | IPK2A | inositol polyphosphate kinase | [68] | |
Bra015643 | 3.68 | 14.95 | H3K27 | AT1G77980 | AGL66 | MADS transcription factor | [69] | |
Pollen germination and tube growth | Bra004738 | 5.24 | 4.14 | H3K4 | AT2G43040 | NPG1 | calmodulin-binding protein | [70] |
Bra010936 | 4.9 | 5.3 | H3K4 | AT1G27460 | NPGR1 | calmodulin-binding protein | [70] | |
Bra011041 | 4.79 | 3.81 | H3K4 | AT4G28600 | NPGR2 | calmodulin-binding protein | [70] | |
Bra010358 | 4.57 | 5.02 | H3K4 | AT4G28600 | ||||
Bra032785 | 4.57 | 5.35 | H3K4 | AT1G24620 | CML25 | EF-hand calcium-binding protein | [71] | |
Bra011622 | 10.36 | 1.5 | H3K4 | AT4G35540 | PTF2 | TFIIB-related protein | [72] | |
Bra039141 | 6.46 | 1.52 | H3K4 | AT3G01150 | PTB1 | polypyrimidine tract-binding protein | [73] | |
Bra003466 | 6.35 | 2.47 | H3K4 | AT3G61710 | ATG6 | autophagy protein | [74] | |
Bra005376 | 7.91 | 1.49 | H3K4 | AT2G34980 | SETH1 | phosphatidylinositol-glycan synthase subunit | [75] | |
Bra031332 | 4.57 | 5.25 | H3K4 | AT3G22200 | POP2 | gamma-aminobutyrate transaminase | [76] | |
Bra009450 | 10.59 | 1.52 | H3K4 | AT5G04480 | BUP | putative glycosyltransferase | [77] | |
Bra000950 | 9.81 | 1.43 | H3K4 | AT4G01220 | MGP4 | Rhamnogalacturonan II xylosyltransferase | [78] | |
Bra015010 | 8.92 | 1.51 | H3K4 | AT4G38430 | ROPGEF1 | guanine nucleotide exchange factor | [79] | |
Bra023489 | 6.24 | 2.66 | H3K4 | AT5G14850 | APTG1 | mannosyltransferase | [80] | |
Bra008404 | 5.91 | 1.53 | H3K4 | AT1G79250 | AGC1.7 | AGC kinase | [81] | |
Bra014529 | 5.46 | 2.83 | H3K4 | AT3G59760 | ATCS-C | O-acetylserine lyase | [82] | |
Bra008733 | 10.81 | 11.6 | H3K27 | AT5G14870 | CNGC18 | a member of the cyclic nucleotide gated channel family | [83] | |
Bra007785 | 7.91 | 14.93 | H3K27 | AT2G25600 | SPIK | member of the Shaker family potassium ion (K+) channel | [84] | |
Bra000105 | 8.69 | 11.79 | H3K27 | AT2G38910 | CPK20 | calcium dependent protein kinase | [85] | |
Bra015442 | 6.91 | 11.81 | H3K27 | AT1G05580 | CHX23 | member of putative Na+/H+ antiporter family | [86] | |
Bra025052 | 4.79 | 14.1 | H3K27 | AT5G45810 | CIPK19 | CBL-interacting protein kinase | [87] | |
Bra022172 | 4.35 | 15.47 | H3K27 | AT3G16640 | TCTP1 | a protein homologous to translationally controlled tumor protein | [88] | |
Bra027968 | 4.01 | 17.49 | H3K27 | AT1G54560 | XIE | myosin family protein with DIL domain-containing protein | [89] | |
Bra008656 | 4.01 | 14.78 | H3K27 | AT5G16020 | GEX3 | plasma membrane localized protein | [90] |