Skip to main content

Table 1 Overall assembly statistics

From: A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

  Amel_4.5 10 × a PacBio Amel_HAv1c Amel_HAv2d Amel_HAv3e
Size Total (Mbp) 229.12 217.80 223.24 225.21 225.23 223.86
Contigs (all) N 16,501 20,240 429 330 331 228
Longest (Mbp) 0.333 0.288 9.726 13.399 13.399 13.400
Mean (Mbp) 0.014 0.011 0.520 0.682 0.684 0.974
N50 (Mbp) 0.046 0.031 3.086 5.167 5.167 5.381
L50 (n) 1390 1968 23 14 14 13
Scaffolds (all)b N 5644 9734 280 177
Longest (Mbp) 4.736 3.297 27.79 27.77
Mean (Mbp) 0.041 0.024 0.816 3.340
N50 (Mbp) 0.997 0.589 11.33 13.62
L50 (n) 65 116 8 7
Scaffolds (anchored to nuclear chr.) N 340 36 16
Longest (Mbp) 4.736 27.79 27.77
Mean (Mbp) 0.598 6.21 13.79
N50 (Mbp) 1.209 11.60 13.62
L50 (n) 52 7 7
  1. aLinked-read sequences taken as scaffolds. Contigs derived from splitting scaffolds on Ns
  2. bIndividual unplaced fragments counted as scaffolds
  3. cPacBio+10x
  4. dPacBio+10x + BioNano
  5. ePacBio+10x + BioNano+Hi-C