Table 2 Sequence content of hybrid assembly
From: A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds
| Â | Amel4.5 | Hybrid assembly (Amel_HAv3) | ||||
|---|---|---|---|---|---|---|
contig location | anchored | unplaced | all | anchored | unplaced | all |
Size (Mbp) | 199.72 | 29.38 | 229.12 | 219.39 | 4.45 | 223.84 |
Contigs (n) | 7769 | 8732 | 16,501 | 67 | 160 | 227 |
Longest contig (Mbp) | 0.333 | 0.072 | 0.333 | 13.400 | 0.486 | 13.400 |
Contig N50 (Mbp) | 0.053 | 0.006 | 0.046 | 6.930 | 0.037 | 5.381 |
Contig L50 (n) | 1094 | 1152 | 1390 | 12 | 24 | 13 |
Scaffolds (n) | 340 | – | 340 | 16 | – | 16 |
GC (%) | 33.98 | 23.94 | 32.70 | 32.72 | 23.45 | 32.53 |
Repeats (%) | 6.80 | 10.51 | 7.27 | 7.50 | 21.55 | 7.78 |
Mappability (avg. score) | 0.967 | 0.843 | 0.896 | 0.985 | 0.639 | 0.978 |
Metazoa BUSCO genes (n,%) | 881 (90.1%) | 60 (6.2%) | 941 (96.2%) | 951 (97.2%) | 8 (0.8%) | 959 (98.1%) |
Hymenoptera BUSCO genes (n,%) | 4088 (92.6%) | 222 (5.0%) | 4310 (97.6%) | 4322 (97.9%) | 15 (0.4%) | 4337 (98.3%) |