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Table 1 SNP identification and selection in the 13 durum wheat cultivars

From: Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm

 

Number

Percent

a. SNPs

 Simple SNPs

33,747

4.52%

 Hemi-SNPs

497,783

66.62%

 Inter-homoeolog SNPs

110,876

14.84%

 SNPs with more than two genotypes

95,358

12.76%

 Assembly discordant SNPs

9400

1.26%

Total SNPs computed

747,164

 

b. Selected SNPs

 Hemi-SNPs

4461

56.18%

 Simple SNPs

3479

43.83%

Selected SNPs for the wheat chip

7940

 
  1. Panel (a) reports the overall SNPs computed, divided in different categories. Panel (b) reports the SNPs selected for the wheat chip with classification between simple and hemi-SNP