From: Staphylococci phages display vast genomic diversity and evolutionary relationships
Pham | Function | Alternative nomenclaturea | Number of members | Domainsb | Conserved, accessory or unique pham |
---|---|---|---|---|---|
Integrases | |||||
148 | Y-Int | Sa3, Sa9, Sa10, Sa11 | 38 | pfam14659; pfam00589 | Conserved (B9); Accessory (B2, B3, B4, B5, B6, B7, B10); Unique (B8, B12, B14, B15, B16, B17) |
280 | Y-Int | Sa1, Sa5 | 27 | pfam14657; pfam14659; pfam00589 | Conserved (B1); Unique (B7); Accessory (B2, B3) |
288 | S-Int | Sa7, Se1, Se12 | 25 | pfam00239; pfam07508 | Accessory (B2, B3, B4); Unique (B6, B10, B11, B13) |
1656 | Y-Int | – | 1 | pfam14659; pfam00589 | Unique (B8) |
1661 | Y-Int | Sa2, Sa6 | 40 | pfam00589 | Accessory (B3, B5, B6, B7) |
Virulence determinants | |||||
297 | virE | 1 | pfam05272 | Unique (B5) | |
529 | holin-like | 12 | pfam16935 | Accessory (B6, B7); Unique (B5) | |
555 | PVL (lukF-PV) | 26 | pfam07968 | Accessory (B5, B6, B7) | |
914 | scn | 17 | pfam11546 | Accessory (B6, B7); Unique (B3) | |
1259 | pemK | 10 | pfam02452 | Accessory (B2, B3); Unique (B5) | |
1270 | virE | 23 | pfam05272 | Accessory (B5); Unique (B15) | |
1322 | holin-like | 1 | pfam16935 | Unique (B6) | |
1460 | sak | 16 | pfam02821 | Accessory (B6, B7); Unique (B8) | |
1579 | mazF | 8 | pfam02452 | Accessory (B6) | |
1597 | hlb | 1 | Pfam03372 | Unique (B7) | |
1903 | eta | 5 | pfam13365 | Accessory (B3); Unique (B2) | |
1939 | PVL (lukS-PV) | 27 | pfam07968 | Accessory (B5, B6, B7) | |
2064 | sea | 7 | pfam01123; pfam02876 | Accessory (B6) | |
2122 | chp | 10 | pfam11434 | Accessory (B6, B7) |