Skip to main content

Table 2 Overview of selected intervals based on the p-value of the correlation between local GEBV and gene expression, and the variance explained by the interval

From: Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle

cell type trait nSel FDR nInt nGenes %var
milk milk 92 0.06 38 33 0.10
fat 94 0.06 42 37 0.13
prot 100 0.06 39 34 0.17
fat% 70 0.08 28 27 0.09
prot% 92 0.06 33 32 0.44
fert 72 0.08 29 27 0.03
blood milk 420 0.01 126 108 0.36
fat 466 0.01 162 121 2.54
prot 466 0.01 139 114 1.06
fat% 414 0.01 136 118 0.62
prot% 466 0.01 147 120 2.57
fert 391 0.01 135 116 0.11
  1. nSel = number of correlations between local GEBV and gene expression with a p-value ≤10− 5, FDR false discovery rate, nInt number of selected unique non-overlapping intervals, nGenes number of unique genes selected, %var. variance explained by the selected unique non-overlapping intervals as percentage of the sum of the variance explained by the non-overlapping intervals that explained the most variance, milk milk yield, fat fat yield, prot protein yield, fat% fat percentage, prot% protein percentage, fert fertility