Table 6 Intervals containing eQTL and QTL
From: Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle
cell type | trait | chr | start (bp) | end (bp) | eQTL gene | topVar | annotation | p_eQTL | p_cor |
|---|---|---|---|---|---|---|---|---|---|
milk | milk | 29 | 42,610,883 | 42,860,883 | ENSBTAG00000037645 | 42,829,338 | 5′ UTR MARK2 | 5.6 × 10−06 | 6.3 × 10− 06 |
milk | fat | 18 | 1,601,923 | 1,851,923 | FUK | 1,840,070 | intron AARS | 5.1 × 10− 06 | 2.5 × 10−07 |
milk | prot% | 18 | 1,550,757 | 1,800,757 | FUK | 1,666,278 | intron COG4 | 3.8 × 10−11 | 8.1 × 10−15 |
WBC | milk | 3 | 25,131,248 | 25,381,248 | SPAG17 | 25,150,562 | intron SPAG17 | 1.2 × 10−06 | 5.5 × 10−12 |
WBC | milk | 5 | 104,173,293 | 104,423,293 | NCAPD2 | 104,278,115 | dns MRPL51 | 4.1 × 10−20 | 4.0 × 10−07 |
WBC | milk | 18 | 18,190,766 | 18,440,766 | BRD7 | 18,301,292 | intron ZNF423 | 8.9 × 10−06 | 2.4 × 10−10 |
WBC | milk | 23 | 31,068,838 | 31,318,838 | BTN1A1 | 31,095,692 | intergenic | 6.3 × 10−08 | 1.5 × 10−06 |
WBC | milk | 26 | 21,889,732 | 22,139,732 | TWNK | 21,901,063 | ups LBX1 | 9.7 × 10−07 | 3.3 × 10−07 |
WBC | fat | 14 | 2,753,849 | 3,003,849 | FAM83H | 2,755,467 | synon LY6K | 2.1 × 10−06 | 9.7 × 10−06 |
WBC | fat | 18 | 1,601,923 | 1,851,923 | FUK | 1,612,928 | ups IL34 & dns SF3B3 | 2.6 × 10−07 | 8.6 × 10−09 |
WBC | fat | 18 | 18,190,766 | 18,440,766 | BRD7 | 18,301,292 | intron ZNF423 | 8.9 × 10−06 | 3.1 × 10−12 |
WBC | fat | 23 | 9,700,270 | 9,950,270 | C6orf222 | 9,728,266 | ups CLPS | 1.3 × 10−07 | 2.9 × 10−06 |
WBC | fat | 26 | 21,139,834 | 21,389,834 | TWNK | 21,142,651 | intron SCD | 5.4 × 10−06 | 5.3 × 10− 06 |
WBC | fat | 26 | 21,889,732 | 22,139,732 | TWNK | 21,893,176 | dns LBX1 | 1.5 × 10−07 | 2.6 × 10−06 |
WBC | prot | 11 | 104,113,835 | 104,363,835 | ABO | 104,225,654 | intergenic | 3.8 × 10−07 | 5.9 × 10−06 |
WBC | prot | 18 | 18,190,766 | 18,440,766 | BRD7 | 18,301,292 | intron ZNF423 | 8.9 × 10−06 | 9.3 × 10−11 |
WBC | fat% | 5 | 75,536,412 | 75,786,412 | ENSBTAG00000012192 | 75,596,191 | intergenic | 9.6 × 10−07 | 4.5 × 10−06 |
WBC | fat% | 5 | 104,120,905 | 104,370,905 | NCAPD2 | 104,139,091 | intron ZNF384 | 3.6 × 10−07 | 2.2 × 10−06 |
WBC | fat% | 26 | 22,005,004 | 22,255,004 | TWNK | 22,005,517 | intron BTRC | 5.4 × 10−07 | 1.9 × 10− 07 |
WBC | prot% | 5 | 24,074,711 | 24,324,711 | CEP83 | 24,074,711 | intron PLXNC1 | 3.2 × 10−06 | 1.8 × 10−12 |
WBC | prot% | 11 | 104,168,845 | 104,418,845 | ABO | 104,225,654 | intergenic | 3.8 × 10−07 | 4.2 × 10−06 |
WBC | prot% | 14 | 2,132,257 | 2,382,257 | MAPK15 | 2,236,999 | splice MAPK15 | 4.7 × 10−06 | 2.2 × 10− 06 |
WBC | prot% | 18 | 1,550,757 | 1,800,757 | FUK | 1,673,395 | intron COG4 | 1.1 × 10−39 | 7.0 × 10−38 |
WBC | prot% | 18 | 2,187,925 | 2,437,925 | FUK | 2,200,039 | intron FA2H | 3.4 × 10−06 | 3.6 × 10−07 |
WBC | prot% | 26 | 24,899,228 | 25,149,228 | ENSBTAG00000038540 | 25,027,259 | intron CFAP43 | 1.3 × 10−06 | 2.3 × 10−08 |
WBC | fert | 6 | 38,538,611 | 38,788,611 | FAM184B | 38,585,743 | intron LAP3 | 9.5 × 10−07 | 9.8 × 10−06 |
WBC | fert | 10 | 37,985,065 | 38,235,065 | CDAN1 | 38,017,802 | intergenic | 3.0 × 10−07 | 2.0 × 10−08 |
WBC | fert | 21 | 48,591,579 | 48,841,579 | SSTR1 | 48,641,167 | intergenic | 6.9 × 10−06 | 1.8 × 10−06 |