Skip to main content

Table 7 Colocalisation between QTL and eQTL

From: Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle

cell type trait n_QTL coloc_QTL n_eQTL coloc_eQTL
milk milk 64 4 361 4
fat 39 3 361 6
prot 45 2 361 4
fat% 9773 34 361 4
prot% 3455 13 361 3
fert 30 1 361 4
WBC milk 64 7 554 8
fat 39 3 554 7
prot 45 2 554 8
fat% 9773 26 554 9
prot% 3455 19 554 15
fert 30 5 554 6
  1. WBC white blood cell, n_QTL = the number of variants with a GWAS p-value ≤10−5, counting maximum 1 QTL per 1 Mb, coloc_QTL = the number of QTL with at least one variant with a colocalization posterior probability (CLPP) ≥ 0.01, n_eQTL = the number of genes with at least eQTL variant within 1 Mb of the gene with a p-value ≤10− 5, coloc_eQTL = the number of eQTL with at least one variant with a colocalization posterior probability (CLPP) ≥ 0.01