Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle

BMC Genomics

Table 8 Top 10 colocalizing variants

cell type	trait	chr	gene	position	annotation	CLPP
WBC	prot%	19	FKBP10	42,601,890	dnst JUP	1.00
WBC	fat%	19	FKBP10	42,601,890	dnst JUP	1.00
WBC	prot	18	PRMT1	57,135,434	intergenic	0.95
WBC	prot%	5	DIP2B	30,479,476	intron SPATS2	0.95
milk	milk	5	PWP1	70,897,603	intergenic	0.74
WBC	fat	18	BRD7	18,411,077	intergenic	0.74
WBC	prot	3	ANKRD35	21,083,019	intergenic	0.69
milk	milk	25	HBQ1	494,716	splice region variant PRR35	0.68
WBC	prot%	25	TFR2	36,092,765	dnst ENSBTAG00000020157	0.68
milk	fat%	8	PTPDC1	87,424,582	intron ROR2	0.59

WBC white blood cells, CLPP colocalization posterior probability, dnst downstream

ISSN: 1471-2164