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Table 4 SNP information for control and ARTP treated samples after calling

From: Novel breeding approach for Japanese flounder using atmosphere and room temperature plasma mutagenesis tool

Sample

Upstream

Exonic

Intronic

Splicing

Downstream

upstream/downstream

Intergenic

Total

ts

tv

ts/tv

c1

116,469

116,181

1,356,072

272

101,018

5849

1,393,467

3,089,328

1,676,361

1,412,967

1.186

c2

106,347

109,337

1,241,373

250

92,833

5258

1,273,066

2,828,464

1,537,682

1,290,782

1.191

c3

105,941

108,654

1,239,371

262

92,870

5236

1,269,953

2,822,287

1,534,177

1,288,110

1.191

m1

109,996

112,412

1,288,306

263

95,991

5487

1,321,804

2,934,259

1,595,108

1,339,151

1.191

m2

112,947

111,782

1,314,387

259

98,438

5714

1,351,103

2,994,630

1,623,581

1,371,049

1.184

m3

113,352

114,531

1,317,274

272

98,624

5595

1,352,071

3,001,719

1,630,355

1,371,364

1.188

m4

111,372

112,731

1,296,977

270

96,508

5583

1,326,500

2,949,941

1,601,682

1,348,259

1.187

m5

107,632

109,741

1,263,174

254

94,376

5404

1,292,999

2,873,580

1,560,292

1,313,288

1.188

m6

115,586

116,261

1,347,778

276

100,946

5744

1,382,047

3,068,638

1,666,239

1,402,399

1.188

m7

109,894

111,811

1,286,623

269

96,192

5416

1,320,482

2,930,687

1,592,922

1,337,765

1.19

m8

108,839

105,835

1,265,898

243

95,682

5439

1,301,310

2,883,246

1,562,074

1,321,172

1.182