Table 1 Comparative expression of the duplicated genes from regions 1 to 3 of strain 042 in the hha null (deletion of the hha and hha2 alleles) and hns mutants. Values indicate the fold change with respect to the wt strain. Fold change values higher than two are considered significant
From: Gene duplications in the E. coli genome: common themes among pathotypes
group | locus tag | hha null | hns | |
|---|---|---|---|---|
Region 1 | 21 | EC042_1328 | 2.1 | 6 |
23 | EC042_1330 | 2.6 | 5 | |
24 | EC042_1333 | 2.5 | 4.2 | |
25 | EC042_1336 | 1.8 | 0.6 | |
26 | EC042_1342 | 3.5 | 4.8 | |
27 | EC042_1343 | 2.8 | 4.8 | |
28 | EC042_1344 | 1.7 | 4 | |
29 | EC042_1349 | 2.4 | 3.8 | |
30 | EC042_1353 | 4.3 | 3.3 | |
31 | EC042_1371 | 1.5 | 6.1 | |
32 | EC042_1372 | 1.5 | 3.8 | |
33 | EC042_1373 | 1.6 | 3.3 | |
34 | EC042_1376 | 2 | 3.7 | |
35 | EC042_1377 | 2.4 | 4.2 | |
Region 2 | 46 | EC042_2236A | 2.9 | 2.9 |
47 | EC042_2237 | 3.8 | 4.5 | |
48 | EC042_2238 | 5.6 | 4.2 | |
49 | EC042_2239 | 3.8 | 3 | |
50 | EC042_2241 | 6.2 | 4.8 | |
51 | EC042_2242 | 3.1 | 3.9 | |
52 | EC042_2243 | 3 | 3.8 | |
53 | EC042_2244 | 2.2 | 2.2 | |
54 | EC042_2244A | 4.9 | 5.9 | |
55 | EC042_2245 | 5 | 5.1 | |
56 | EC042_2246 | 4.6 | 4.8 | |
57 | EC042_2247 | 5 | 3.9 | |
58 | EC042_2247A | 5 | 4.7 | |
59 | EC042_2248 | 5.1 | 4.5 | |
60 | EC042_2249 | 4.9 | 2.6 | |
Region 3 | 64 | EC042_3180 | 3 | 4.4 |
65 | EC042_3181 | 3.4 | 2.4 | |
66 | EC042_3182 | 2.1 | 2.2 | |
67 | EC042_3183 | 1.9 | 1.3 | |
68 | EC042_3187 | 3.8 | 1.1 | |
70 | EC042_3190 | 0.6 | 0.3 | |
71 | EC042_3191 | 1.9 | 1.6 |