Skip to main content

Table 1 Summary of genome-wide bisulfite sequencing data for six Drosophila melanogaster samples

From: Cadmium-induced genome-wide DNA methylation changes in growth and oxidative metabolism in Drosophila melanogaster

Sample Clean data (bp) HQ clean data (bp) No. of clean read No. of HQ clean reads (%) Q20 (%) Q30 (%) GC (%) N (%) HQ clean data / clean data (%)
CK-1 6,342,804,900 6,265,486,794 42,285,366 41,829,038 (98.92%) 6,127,259,145 (97.79%) 5,943,780,984 (94.87%) 1,182,385,554 (18.87%) 987,865 (0.02%) 98.78%
CK-2 5,651,708,700 5,543,296,390 37,678,058 36,998,402 (98.20%) 5,328,517,738 (96.13%) 5,021,173,126 (90.58%) 1,040,523,808 (18.77%) 593,380 (0.01%) 98.08%
CK-3 6,667,975,500 6,566,612,690 44,453,170 43,845,552 (98.63%) 6,346,014,536 (96.64%) 6,013,608,683 (91.58%) 1,291,540,988 (19.67%) 715,638 (0.01%) 98.48%
s52–1 6,380,107,200 6,289,532,315 42,534,048 41,983,774 (98.71%) 6,135,594,846 (97.55%) 5,933,616,057 (94.34%) 1,179,393,128 (18.75%) 976,796 (0.02%) 98.58%
s52–2 6,989,049,900 6,860,524,362 46,593,666 45,809,874 (98.32%) 6,685,079,771 (97.44%) 6,464,628,728 (94.23%) 1,303,391,516 (19.00%) 1,073,466 (0.02%) 98.16%
s52–3 6,172,341,000 6,053,568,099 41,148,940 40,413,472 (98.21%) 5,787,545,449 (95.61%) 5,425,219,375 (89.62%) 1,168,998,770 (19.31%) 567,912 (0.01%) 98.08%
  1. HQ high quality