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Table 2 Summary for RNA-SEQ information in all 12 samples

From: Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate

ID Sample name Raw reads number Filtered Read number Filtered Ratio (%) Alignment rate (%) Concordantly mapped once (%)
T01 2175liver 26,891,820 22,939,890 85.30 92.59 62.51
T02 2087liver 30,771,063 26,403,790 85.81 92.05 61.55
T03 2262liver 32,216,234 26,845,513 83.33 92.50 61.62
T04 2179liver 31,712,653 27,077,265 85.38 92.23 61.73
T05 2236liver 29,621,899 25,262,329 85.28 92.08 61.02
T06 2216liver 30,023,436 25,342,065 84.41 92.02 59.91
T07 2175HP 28,534,878 24,146,563 84.62 92.98 62.62
T08 2087HP 30,762,452 25,731,313 83.65 92.69 62.88
T09 2262HP 31,775,826 26,454,880 83.25 93.05 64.55
T10 2179HP 31,607,048 26,369,442 83.43 93.77 65.63
T11 2236HP 31,618,689 25,368,078 80.23 92.74 66.02
T12 2216HP 30,738,150 25,861,409 84.13 93.31 67.53
  1. Concordantly mapped once rate means the paired reads were mapped to bighead carp genome only once with concordantly distance
  2. HP Hypothalamus-pituitary tissue