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Table 5 Comparison of the genus-level performance of MiCoP and MetaPhlAn2 on a mock fungal community consisting of 4 genera

From: MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples

 

Precision

Recall

F1-Score

Reads per minute

MiCoP

1.0

0.75

0.85714

6934

MetaPhlAn2

NaN (0/0)

0.0

NaN

187961

  1. MiCoP detects 3 of the 4 genera with no false positives, while MetaPhlAn2 detects nothing. Because MetaPhlAn2 has 0 true and false positives, precision cannot be computed. MetaPhlAn2 was faster, but MiCoP still finished in less than 3 h
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BMC Genomics

ISSN: 1471-2164

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