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Fig. 6 | BMC Genomics

Fig. 6

From: Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

Fig. 6

Examples of the resolution of alternative splicing with respect to a related organism. The splicing structures are on exons in the coding region of the related organism. For the dSarm gene, uppercase letters indicate isoforms and their start/end exons, with Oases resolving less isoforms than extVelvet. In the other splicing structures, the isoforms are drawn to scale and the starting and ending amino acid positions of isoform 1 are shown. For the ZDHHC16 gene, Trans-ABySS cannot resolve its different isoforms on S. boliviensis, and recovers a shorter segment of it on M. musculus with no known alternative splicing. Trans-ABySS cannot resolve isoforms 1 and 3 of the STAT3 gene, while Oases cannot resolve isoforms 1 and 2 of the AT4G34660 gene

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